View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_33 (Length: 258)
Name: NF17343_high_33
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 5891000 - 5891233
Alignment:
| Q |
11 |
caaaggaattcaatttttagtnnnnnnntataacaaaaaaggtgataatgttcccatgcaatatcacacacgtacccacccacttgaaaatatgatacca |
110 |
Q |
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| T |
5891000 |
caaaggaattcaatatttagtaaaaaaatataacaaaaaaggtgataatgttcccatgcaagatcacacacgtacccacccacttgaaaatatgatacca |
5891099 |
T |
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| Q |
111 |
aactgaatcggcaaaatcacacctacaaaagagacggtctgcctcttctaccattttcctcacaccaaacacaatttgtcaaaccatcctctccaagaat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5891100 |
aactgaatcggcaaaatcacacctacaaaagagacggtctgcctcttttaccattttcctcacaccaaacacaatttgtcaaaccatcctctccaagaat |
5891199 |
T |
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| Q |
211 |
tcccctcttttataagttcccaggagttggaagt |
244 |
Q |
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| T |
5891200 |
tcccctcttttataagttcctaggagttggaagt |
5891233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 34666748 - 34666849
Alignment:
| Q |
83 |
tacccacccacttgaaaatatgataccaaactgaatcggcaaaatcacacctacaaaagagacggtctgcctcttctaccattttcctcacaccaaacac |
182 |
Q |
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| T |
34666748 |
tacccaccaacttgaaaatatgacaccaaatcgatgcggcaaaaccatacatacaaaaaagatgatcttcctcttctatca-tttccacacactaaacac |
34666846 |
T |
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| Q |
183 |
aat |
185 |
Q |
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| T |
34666847 |
aat |
34666849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 6697664 - 6697611
Alignment:
| Q |
87 |
cacccacttgaaaatatgataccaaactgaatcggcaaaatcacacctacaaaa |
140 |
Q |
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| T |
6697664 |
cacctacttgaaaatatgataccaaaccgatccggcaaaaccacacctataaaa |
6697611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 12870456 - 12870367
Alignment:
| Q |
51 |
ggtgataatgttcccatgcaatatcacacacgtacccacccacttgaaaatatgataccaaactgaatcggcaaaatcacacctacaaaa |
140 |
Q |
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| T |
12870456 |
ggtgataatgttcccaggctaggtcacaatcgtaaccacccgtttgaaaatatgatacctaaccgaaccggcaaaactacacatacaaaa |
12870367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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