View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_4 (Length: 529)
Name: NF17343_high_4
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_4 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 22 - 486
Target Start/End: Original strand, 33242320 - 33242791
Alignment:
| Q |
22 |
gggtatacatggaaaggtaatctccatggtatttactcagcacgagatggatattattgggtgaacatgattgcttttgctgctagtgcagtggagaatg |
121 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
33242320 |
gggtatacttggaaaggtaatcttcatggtatttactcagcagaggatggatattattggttgaacatgattgcttttgctgctggtgcagtggagaatg |
33242419 |
T |
|
| Q |
122 |
tttcatggacttgaacatggcaacttccagcaccggaaaaggtaaaattctttttgtggactgctcttcagaactccctgcctacgcattgaatgttaag |
221 |
Q |
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||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
33242420 |
tttcatgaacttggacatggcaacttccagcgttggaaaaggtaaaattctttttgtggactgctcttcagaactccctgcctacgcattggatcttaag |
33242519 |
T |
|
| Q |
222 |
ccatcgtggtgtgcttcaggtgaacctctacccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgcttt |
321 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33242520 |
tcatcgtggtgtgcttcaggtgaacctcttcccaagatgccatcaggaacccgagactatgcttcacttcttgtgtgattgtgcttttgtgaattgcttt |
33242619 |
T |
|
| Q |
322 |
tggagatcaatttgattctcgagtaacttg-ttttccagaccgataatttgtatgagtggttgcggactggtgttaaaggttcaac------tatttata |
414 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
33242620 |
tggagatcaatttgattctcgagtaactcgtttttccagaccgataatttgtatgagtggttgcggactggtgtcaaaggttcaactatttatatttata |
33242719 |
T |
|
| Q |
415 |
tgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcac |
486 |
Q |
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|| ||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| |
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| T |
33242720 |
tgctcctggaagctatttggtgactttggtgtgcaaggaataatttatgtatggagaatgaattggtttcac |
33242791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 22 - 486
Target Start/End: Original strand, 33250241 - 33250711
Alignment:
| Q |
22 |
gggtatacatggaaaggtaatctccatggtatttactcagcacgagatggatattattgggtgaacatgattgcttttgctgctagtgcagtggagaatg |
121 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| || |
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| T |
33250241 |
gggtatacttggaaaggtaatcttcatggtatttactcagcagaggatggatattattggttgaacatgattgcttttgctgctggtgcagtggagactg |
33250340 |
T |
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| Q |
122 |
tttcatggacttgaacatggcaacttccagcaccggaaaaggtaaaattctttttgtggactgctcttcagaactccctgcctacgcattgaatgttaag |
221 |
Q |
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||||||| ||||| | |||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
33250341 |
tttcatgaacttggatatggaaccttccagcgccggaaaaggaaaaattctttttgtggactgctcttcagaactcc-tgcctacgcattggatgttaag |
33250439 |
T |
|
| Q |
222 |
ccatcgtggtgtgcttcaggtgaacctctacccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgcttt |
321 |
Q |
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||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33250440 |
ccatcatggtgtgcttcagttgaacctcttcccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgctct |
33250539 |
T |
|
| Q |
322 |
tggagatcaatttgattctcgagtaacttg-ttttccagaccgataatttgtatgagtggttgcggactggtgttaaaggttcaa------ctatttata |
414 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
33250540 |
tggagatcaatttgattctcgagtaactcgtttttccagaccgataatttgtatgagttgttgcggactggtgttaaaggttcaattatttatatttata |
33250639 |
T |
|
| Q |
415 |
tgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcac |
486 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33250640 |
tgttcctggaagctatttggtggctttggtgcgcaaggaataagttatgtatggagaatgaattggtttcac |
33250711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 25 - 486
Target Start/End: Original strand, 44985339 - 44985802
Alignment:
| Q |
25 |
tatacatggaaaggtaatctccatggtatttactcagcacgagatggatattattgggtgaacatgattgcttttgctgctagtgcagtggagaatgttt |
124 |
Q |
| |
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||||| ||||||||||||||| | | | |||||| |||| | |||||||||| ||| |||||||||||| |||||||||| |||||||||| | ||||| |
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| T |
44985339 |
tatacttggaaaggtaatctctaagatgtttacttagcatgggatggatattgttgcctgaacatgattgattttgctgctggtgcagtggaaattgttt |
44985438 |
T |
|
| Q |
125 |
catggacttgaacatggcaacttccagcaccggaaaaggtaaaattctttttgtggactgctcttcagaactccctgcctacgcattgaatgttaagcca |
224 |
Q |
| |
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| |||||||| | |||||| |||||||| ||| ||||||||||| ||||||| | |||||| |||| | | ||||| ||| ||||||||||| |
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| T |
44985439 |
cgtggacttggatatggcagcttccagcgccgaaaaaggtaaaaaaaaaaatgtggaccgttcttcataacttcttacctacctgttggatgttaagcca |
44985538 |
T |
|
| Q |
225 |
tcgtggtgtgcttcaggtgaacctctacccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgcttttgg |
324 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||| ||||| |||||| |||||||| |||| |||||| ||||| ||||||| |||||| |
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| T |
44985539 |
ccgtggtgtgcttcaggtgaacctctgcctaagatgccatcagaaacctcagactacgcttcactgcttgtgtgattatgcttctgtgaatcacttttgc |
44985638 |
T |
|
| Q |
325 |
agatcaatttgattctcgagtaact-tgttttccagaccgataatttgtatgagtggttgcggact-ggtgttaaaggttcaactatttatatgttcctg |
422 |
Q |
| |
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||||||||| |||||||| |||||| ||||||||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||| ||||| |
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| T |
44985639 |
agatcaattggattctcgggtaactcatttttccagaccgataatttgtgttagtggttgcggactcggggttaaaggttcaactatttatatgctcctg |
44985738 |
T |
|
| Q |
423 |
gaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcac |
486 |
Q |
| |
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| |||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
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|
| T |
44985739 |
gtagctgtttggtggctttggtgcgcaaagaataagttgtgtatggagaatgagttggtttcac |
44985802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 220 - 414
Target Start/End: Complemental strand, 25867272 - 25867078
Alignment:
| Q |
220 |
agccatcgtggtgtgcttcaggtgaacctctacccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgct |
319 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| | |||||||| ||||| ||||||||||| ||||||| | ||| ||| ||||||||||||||||| | | |
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| T |
25867272 |
agccatcgtg-tgtgctccagctgaacctttgaccaagatgtaatcagaaacctgagactttgcttcattgcttacgttattgtgcttttgtgaatcgtt |
25867174 |
T |
|
| Q |
320 |
tttggagatcaatttgattctcgagtaac-ttgttttccagaccgataatttgtatgagtggttgcggactggtgttaaaggttcaactatttata |
414 |
Q |
| |
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|||||||||||||| |||||||| |||| || ||||||| ||| ||||||||||||| |||||| ||||||||| |||| |||| ||||||||| |
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| T |
25867173 |
tttggagatcaattagattctcggataacttttttttccaaaccaataatttgtatgaatggttgtggactggtgctaaatcttcatctatttata |
25867078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 486
Target Start/End: Complemental strand, 40727 - 40632
Alignment:
| Q |
391 |
gtgttaaaggttcaactatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcac |
486 |
Q |
| |
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|||| ||||||||| |||||||||||||||| | ||| |||||||||||||| |||| || |||||| | ||| ||||||||||||||||||||| |
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| T |
40727 |
gtgtgaaaggttcatctatttatatgttccttgcggctgtttggtggctttggcgcgctagaaataagctgtgtgtggagaatgaattggtttcac |
40632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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