View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17343_high_42 (Length: 238)

Name: NF17343_high_42
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17343_high_42
NF17343_high_42
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-223)||(1114-1336)
scaffold0341 (1-223)||(8768-8990)
[»] chr1 (12 HSPs)
chr1 (1-223)||(6507089-6507311)
chr1 (1-223)||(6521424-6521646)
chr1 (1-149)||(6512990-6513138)
chr1 (1-149)||(6517389-6517537)
chr1 (1-125)||(47713374-47713498)
chr1 (32-151)||(6500291-6500410)
chr1 (1-125)||(47718168-47718292)
chr1 (1-125)||(47745957-47746081)
chr1 (32-128)||(47777837-47777933)
chr1 (32-129)||(6523520-6523617)
chr1 (1-125)||(47760289-47760413)
chr1 (82-120)||(47604395-47604433)
[»] chr5 (1 HSPs)
chr5 (21-125)||(27371777-27371881)


Alignment Details
Target: scaffold0341 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1114 - 1336
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1114 tttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 1213  T
Q  101 ggtaggtgctgttggttgtgtagttaccaccatcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgaga 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1214 ggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgaga 1313  T
Q  201 tgtgaaaatgaagatgagaagga 223  Q
    ||||||||||||  |||||||||    
T  1314 tgtgaaaatgaatgtgagaagga 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8768 - 8990
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8768 tttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 8867  T
Q  101 ggtaggtgctgttggttgtgtagttaccaccatcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgaga 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8868 ggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgaga 8967  T
Q  201 tgtgaaaatgaagatgagaagga 223  Q
    ||||||||||||  |||||||||    
T  8968 tgtgaaaatgaatgtgagaagga 8990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6507089 - 6507311
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6507089 tttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 6507188  T
Q  101 ggtaggtgctgttggttgtgtagttaccaccatcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgaga 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6507189 ggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgaga 6507288  T
Q  201 tgtgaaaatgaagatgagaagga 223  Q
    ||||||||||||  |||||||||    
T  6507289 tgtgaaaatgaatgtgagaagga 6507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6521646 - 6521424
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    ||||||||||| |||||  | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||    
T  6521646 tttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgt 6521547  T
Q  101 ggtaggtgctgttggttgtgtagttaccaccatcgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgaga 200  Q
    ||||||||||||| |||| ||||||||||||||| |||  ||||||||| | |||| |||||||   || || ||||||||||||| || ||| ||||||    
T  6521546 ggtaggtgctgtttgttgggtagttaccaccatcattattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgaga 6521447  T
Q  201 tgtgaaaatgaagatgagaagga 223  Q
    |||||||||||| ||||||||||    
T  6521446 tgtgaaaatgaaaatgagaagga 6521424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 6512990 - 6513138
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||    
T  6512990 tttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgt 6513089  T
Q  101 ggtaggtgctgttggttgtgtagttaccaccatcgttaccttgatcaca 149  Q
    | ||||||||||||||||||||||||||||||||||||  |||||||||    
T  6513090 gataggtgctgttggttgtgtagttaccaccatcgttattttgatcaca 6513138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 6517389 - 6517537
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||| |||||| || ||||||||||    
T  6517389 tttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatggataaaagggtgttaaggtttgtgt 6517488  T
Q  101 ggtaggtgctgttggttgtgtagttaccaccatcgttaccttgatcaca 149  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  6517489 ggtaggtgctgttggttgtgtagataccaccatcgttattttgatcaca 6517537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 47713374 - 47713498
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    ||||||||||||||||||  |||||||||| |||| |||||||||||||| || |   |||||||||||||| |||||| |||||| ||||||||  | |    
T  47713374 tttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgtttt 47713473  T
Q  101 ggtaggtgctgttggttgtgtagtt 125  Q
    | |||||||| |||| |||||||||    
T  47713474 gataggtgctattggctgtgtagtt 47713498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 6500291 - 6500410
Alignment:
Q  32 aattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccacc 131  Q
    |||| |||||||||||||| || ||| |||||||||||||||| |||| ||| || ||||||||| |||  |||||||| || |||||||||||||| |     
T  6500291 aattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtgtgttgaggtttttgtcataggtgctatttgttgtgtagttacctct 6500390  T
Q  132 atcgttaccttgatcacaaa 151  Q
    || |||  ||||||||||||    
T  6500391 attgttgtcttgatcacaaa 6500410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 47718168 - 47718292
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    ||||||||||| ||||||  |||||||||| |||| |||||||||||||| || ||| |||||||||| ||| |||| | ||||||  |||||||  | |    
T  47718168 tttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgtttt 47718267  T
Q  101 ggtaggtgctgttggttgtgtagtt 125  Q
    | |||||||| |||| |||||||||    
T  47718268 gataggtgctattggctgtgtagtt 47718292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 47745957 - 47746081
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    |||||||| || ||||||  |||||||||| |||| |||||||||||||| || |   |||||||||||||| |||||| |||||| ||||||||  | |    
T  47745957 tttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgtttt 47746056  T
Q  101 ggtaggtgctgttggttgtgtagtt 125  Q
    | |||||||| |||| |||||||||    
T  47746057 gataggtgctattggctgtgtagtt 47746081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 47777933 - 47777837
Alignment:
Q  32 aattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttacc 128  Q
    |||| ||||||||||| || || | | |||||||| |||||||||||| ||| || ||||||||||| | |||||||||||| ||||||||||||||    
T  47777933 aattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtttgtttcgtaggtgctgtttgttgtgtagttacc 47777837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 6523617 - 6523520
Alignment:
Q  32 aattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttacca 129  Q
    |||| |||||||||||||| || |   ||||||||||||||||||| ||||| | ||| |||||||| |||||| | ||||||| ||||||| |||||    
T  6523617 aattgtagaaaccgtagttgatttgcgtgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggtacca 6523520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 47760289 - 47760413
Alignment:
Q  1 tttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgt 100  Q
    ||||||||||| ||||||  |||||||||   ||| |||||||||||||| || |||  ||||||||| ||| |||| | || ||| ||||||||  | |    
T  47760289 tttactttgtcagtgttttggccataagaaatattgtagaaaccgtagttgatttctgcgttggaagttagattggacaaaacggtgttgaggttgtttt 47760388  T
Q  101 ggtaggtgctgttggttgtgtagtt 125  Q
    | |||||||| |||| |||||||||    
T  47760389 gataggtgctattggctgtgtagtt 47760413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 47604433 - 47604395
Alignment:
Q  82 agggttttgaggtttgtgtggtaggtgctgttggttgtg 120  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  47604433 agggttttgaggtttgtttggtaggtgctgttggatgtg 47604395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 27371777 - 27371881
Alignment:
Q  21 gccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtg 120  Q
    |||||| ||| |||| || |||||||||||||| ||| ||| ||||| || | || ||||||||||||| |||||  ||| ||||||||| |||  ||||    
T  27371777 gccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattgactgtg 27371876  T
Q  121 tagtt 125  Q
    |||||    
T  27371877 tagtt 27371881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University