View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_50 (Length: 221)
Name: NF17343_high_50
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_50 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 34880114 - 34880284
Alignment:
| Q |
18 |
atcattggcatacaatatgagcgaattccccatcacagtaactgctgataggtaaaggcacagctacgaattatcggttcatgtttctcttatgcggtag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880114 |
atcattggcatacaatatgagcgaattccccatcacaataactgctgataggtaaaggcacagctacgaattatcggttcatgtttctcttatgcggtag |
34880213 |
T |
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| Q |
118 |
ccagcttcctagagtacacaatgtacataggatccgagcgtccaggatttggagaaatatccacagcctac |
188 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880214 |
ccagcttcctagagtacacaatgtacatgggatccgagcgtccaggatttggagaaatatccacagcctac |
34880284 |
T |
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