View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_8 (Length: 484)
Name: NF17343_high_8
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Original strand, 27467288 - 27467741
Alignment:
| Q |
20 |
aatctaaccaatcatcaggtgacagctgtcaatgtaccaactgagctgcaactaaccagtgtcatattttacgatgatgagtattatgtgtaattgtttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
27467288 |
aatctaaccaatcatcaggtgacagctgtcaatgtaccaactgaactgcaactaaccagtgtcataatttatgatgatgagtattatgtgtaattgtttt |
27467387 |
T |
|
| Q |
120 |
tatcaatgtatgattataaaactgtttcatagttcaaattgaagtagtaggagtttttatcaatgtaagggtctcctattatttgatcatagtagtagca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| | |
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| T |
27467388 |
tatcaatgtatgattataaaactgtttcatagttcaaattgcagtagtaggagtttttatcaatgtaaggatctcctattatttaatcatagcagtagta |
27467487 |
T |
|
| Q |
220 |
tcacacaaaagttttgacactttctaaaatattgaggtttttgttatttaaatattttcaatttctccaacttgaaaagcataaattttgtaacttaaat |
319 |
Q |
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|| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27467488 |
tctgacaaaagttttgacactttgtaagatattgaggtttttgttatttaaatattttcaatttctccaacttgaaaagcataaattttgtaacttaaat |
27467587 |
T |
|
| Q |
320 |
cagtatcaaccccctgttatttgacctattttaatgcttgaatttaaatattattttccttctcttttgaagtttacttttgtaatagtgtttcttcagg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27467588 |
cagtatcaaccccctgttatttgacctattttaatgcttgaatttaaatattattttccttctcttttgaagtttacttttgtaatagtgtttcttcagg |
27467687 |
T |
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| Q |
420 |
ttcacattattnnnnnnnnttttcccttcctttcttcagttgttttctgccttt |
473 |
Q |
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| T |
27467688 |
ttcacattattaaaatattttttcccttcctttcttcagttgttttctgccttt |
27467741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 28475788 - 28475828
Alignment:
| Q |
223 |
cacaaaagttttgacactttctaaaatattgaggtttttgt |
263 |
Q |
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| T |
28475788 |
cacaaaactttagacactttctaaaatattgaggcttttgt |
28475828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 28500863 - 28500903
Alignment:
| Q |
223 |
cacaaaagttttgacactttctaaaatattgaggtttttgt |
263 |
Q |
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||||||| ||| |||||||||||||||||||||| |||||| |
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| T |
28500863 |
cacaaaactttagacactttctaaaatattgaggcttttgt |
28500903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 328
Target Start/End: Complemental strand, 43370977 - 43370875
Alignment:
| Q |
224 |
acaaaagttttgacactttctaaaatattgaggtttttgttatttaaatattttcaatttctccaacttgaaaagcataaattttgtaacttaaatcagt |
323 |
Q |
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|||||| ||||| |||||| |||||| ||| ||||| |||||| |||||||||| ||| ||| ||||||||||||| ||||||| | ||| ||||| |
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| T |
43370977 |
acaaaacttttggcacttttaaaaata--gagatttttattattttaatattttcattttatcctccttgaaaagcatattttttgtagcctaattcagt |
43370880 |
T |
|
| Q |
324 |
atcaa |
328 |
Q |
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||||| |
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|
| T |
43370879 |
atcaa |
43370875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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