View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_1 (Length: 817)
Name: NF17343_low_1
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 425 - 802
Target Start/End: Complemental strand, 43219327 - 43218942
Alignment:
| Q |
425 |
ttgataaatgaattttaaaattgttgacaagaaactcgtcatatttattgctggagtctcttgtaaatatgtgagatagactttgtatcaaatataagtc |
524 |
Q |
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| T |
43219327 |
ttgaaaaatgaattttaaaattgttgacaagaaactcgtcatatttattgctggagtctcttgtaaatatgtgagatagactttgtataaaatataagtc |
43219228 |
T |
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| Q |
525 |
ttggattgtaccctttcagattaacnnnnnnnaatttggttgaaatttttgaatcattgatacacaaattgaaattgtattatataacaactgatacata |
624 |
Q |
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| T |
43219227 |
ttggattgtaccctttcagattaactttttt-aatttggttgaaatttttgaatcattgatacacaaattgaaattgtattatataacaactgatacata |
43219129 |
T |
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| Q |
625 |
ataattctttcagtacatgcaaaccacatatacaaggcacattgttgaactaagactattgcaagtttattcctatagaatcaagaagagattgatgaag |
724 |
Q |
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| T |
43219128 |
ataattctttcagtacatgcaaaccacatatacaaggcacattgttgaactaagactattgcaagtttattcctatagaatcaagaagagattgatgaag |
43219029 |
T |
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| Q |
725 |
agaaaatcaagctagcttagttcctgacttccttcaga---------ttaatgtttgatatttttgtttagaatatgttgcacttgc |
802 |
Q |
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| T |
43219028 |
agaaaatcaagctagcttagttcctgacttccttcagataaagacttttaatttttgatatttttgtttagaatatgttgcacttgc |
43218942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 43219617 - 43219478
Alignment:
| Q |
49 |
tttaatgaccttcactttgtttatgttttcacttttgtattgaatttaattgtatttgattttgtaattcttaccatcatttgttcatagtaaaattatc |
148 |
Q |
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| T |
43219617 |
tttaatgaccttcactttgtttatgttttcacttttgtattgaatttaattgtatttgattttgtaattc--accatcatttgttcatagtaaaattatc |
43219520 |
T |
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| Q |
149 |
cttgactctgtcaacattgctcattttcatccttttgtcaat |
190 |
Q |
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| T |
43219519 |
cttgactctgtcaacattgctcattttcatccttttgtcaat |
43219478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 43219477 - 43219416
Alignment:
| Q |
217 |
tccgtcaatgtcaatttagtttctataatgtacaatgtactatcaattaacacatggtttca |
278 |
Q |
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| T |
43219477 |
tccgtcaatgtcaatttagtttctataatgtacaatgtactatcaattaacacatggtttca |
43219416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 43219372 - 43219325
Alignment:
| Q |
301 |
tttgttttagacttcattcactcttaggctgacctagggttcaatttg |
348 |
Q |
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| T |
43219372 |
tttgttttagacttcattcactcttaggctgacctagggttcaatttg |
43219325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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