View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_10 (Length: 476)
Name: NF17343_low_10
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 21 - 476
Target Start/End: Complemental strand, 34330991 - 34330536
Alignment:
| Q |
21 |
gcagatcattggctgggaatttgtttcattgaagagtaaggaaaaaaggtagggtaaagagaatatgacatgtttggtttcaacagctttataattggtg |
120 |
Q |
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| T |
34330991 |
gcagatcattggctgggaatttgtttcattgaagagtaaggaaaaaaggtagggtaaagagaatatgacatgtttggtttcaacagctttataattggtg |
34330892 |
T |
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| Q |
121 |
acaggacaaattggtacacagacctgaaacacatatatatgaaagcaaaaggaatttcataagcaaccaacaacacaacctagtagttttctcagattca |
220 |
Q |
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| T |
34330891 |
acaggacaaattggtacacagacctgaaacacatatatatgaaagcaaaaggaatttcataagcaaccaacaacacaacctagtagttttctcagattca |
34330792 |
T |
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| Q |
221 |
tttcaatttcatctgaactcagcttttctagttacaagtatactaaactaatataacatcactgaaagaaagaaagnnnnnnnnngtgcatgaaacaaga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34330791 |
tttcaatttcatctgaactcagcttttctagttacaagtatactaaactaatataacatcactgaaagaaagaaagaaaaaaacagtgcatgaaacaaga |
34330692 |
T |
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| Q |
321 |
tatggaaagaacaacaacaatgaaaacctttgattgtaacctgcctccaaaatcaccaaccatcttaagagatatagatgcatctttctcatcctatctc |
420 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34330691 |
tatggaaagaacaacaacaataaaaacctttgattgtaacctgcctccaaaatcaccaaccatcttaagagatatagatgcatctttctcatcctatctc |
34330592 |
T |
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| Q |
421 |
acaccccaaaagccaaataatcataatcaccaccacaaactcgacgatcccacctc |
476 |
Q |
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| T |
34330591 |
acaccccaaaagccaaataatcataatcaccaccacaaactcgacgatcccacctc |
34330536 |
T |
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