View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17343_low_12 (Length: 437)
Name: NF17343_low_12
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 13460466 - 13460059
Alignment:
| Q |
13 |
attatactaacatggttgcatattctattaaggtatacctgaagagtattggaagagactatcaatgattcgatatcaacaaactcgagaaaccatctaa |
112 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13460466 |
attagactaacttggttgcatattctattaaggtatacctgaagagtgttggaagagactatcaatgattcgatatcaacaaactcgagaaaccatctaa |
13460367 |
T |
|
| Q |
113 |
ttagaattgaaggagcctctgcataactccacctgatatctgcatgaatctctatgtgcttaacagaactaagggggttcccaaataaaatctgaaaagg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13460366 |
gtagaattgaaggagcctctgcataactccacctgatatctgcatgaatctctatgtgcttaacagaactaagggggttcccaaataaaatctgaaaagg |
13460267 |
T |
|
| Q |
213 |
tgtacccataaaagtaaatgcactcagatttggagtaaatagctcaattttgcaattgttcttaggttcaaaagaaaactctattgctaatcccacaagt |
312 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13460266 |
agtacccataaaagtaaatgcacacagatttggagtaaatagctcaattttgcgattgttcttaggttcaaaagaaaactctattgctaatcccacaagt |
13460167 |
T |
|
| Q |
313 |
gttgtacttgatatgcagaggttttcttcaccaaggatttcaaaatgagcaatctccaaaagcttcaacctaggatatgccagaaaaagatcgggtccac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13460166 |
gttgtacttgatatgcagaggttttcttcaccaaggatttcaaaatgagcaatctccaaacgcttcaacctaggatatgccagaaaaagatcgggtccac |
13460067 |
T |
|
| Q |
413 |
cacgaaag |
420 |
Q |
| |
|
|||||||| |
|
|
| T |
13460066 |
cacgaaag |
13460059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 7126756 - 7126615
Alignment:
| Q |
42 |
aaggtatacctgaagagtattggaagagactatcaatgattcgatatcaacaaactcgagaaaccatctaattagaattgaaggagcctctgcataactc |
141 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| || | ||||| ||| ||| | ||||| |||| ||||| |||||||| | ||||| || |
|
|
| T |
7126756 |
aaggtatacctgaagagtattcgaagagacggtcaatgttttggtatcagcaagctcttgcaaccagctaaggagaatcgaaggagcagttacataattc |
7126657 |
T |
|
| Q |
142 |
cacctgatatctgcatgaatctctatgtgcttaacagaacta |
183 |
Q |
| |
|
|||| |||| ||||| ||||| | ||| |||||||||||| |
|
|
| T |
7126656 |
caccacatatttgcataaatcttgacgtgtttaacagaacta |
7126615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University