View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_13 (Length: 429)
Name: NF17343_low_13
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 39960548 - 39960952
Alignment:
| Q |
11 |
ttatactgtggcaattggccaaataatcaacttaagatagatgcatctgtttgcagattgaaaaaacagattctcaattagttctcaggagttaataagt |
110 |
Q |
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| T |
39960548 |
ttatactgtggcaattggccaaataatcaacttaagatggatgcatctgtttgcagattgaaaaaacagattctcaattagttctcaggagttaataagt |
39960647 |
T |
|
| Q |
111 |
gctaccgttttgattattgatttttcaggtaagagtcatgaatcataatcataagtaataggatgagtgatgattagtgttgtataattgtttctgttta |
210 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39960648 |
gctaccgttttgattattgatttctcaggtaagagtcatgaatcataatcacaagtaataggatgagtgatgattagtgttgtatagttgtttctgttta |
39960747 |
T |
|
| Q |
211 |
tggtttttcttttcctacgttttcgtcctcatctattaagataagatttgagtgtttctgagtcatttggtttcagctgtcaatgaaactggaaatctgg |
310 |
Q |
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| T |
39960748 |
tcgtttatcttttcctacgttttcgtcctcatctattaagataagatttgagtgtttctgagtcatttggtttcagctgtcaatgaaactggaaatctgg |
39960847 |
T |
|
| Q |
311 |
tcagcttggttgaattgtatttttaaagcaagcattgaattttgatgcatatttacaaacagttgacnnnnnnnggtcattcttagagtagcgatagggt |
410 |
Q |
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| T |
39960848 |
tcagcttggttgaattgtatttttaaagcaagcattgaattttgatgcatatgtacaaacagttgactttttttggtcattcttagagtagcgatagggt |
39960947 |
T |
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| Q |
411 |
aaatg |
415 |
Q |
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| T |
39960948 |
aaatg |
39960952 |
T |
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