View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_15 (Length: 413)
Name: NF17343_low_15
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 23 - 396
Target Start/End: Complemental strand, 32334888 - 32334515
Alignment:
| Q |
23 |
accatgacatagagcataaaaagcttctgccgagcacgagtcattgcaacatatagtaaacgtctttcttccttataatcataaaagaaataatcattac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32334888 |
accatgacatagagcataaaaagcttctgccgagcacgagtcattgcaacatatagtaaacgtctttcttccttataatcataaaagaaataatcattac |
32334789 |
T |
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| Q |
123 |
caataaccaatctattataacaaactacaagacaaaaaatgaacatatgaataaattatagaataataataatgtacctcaactatggctgcagtgtcct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32334788 |
caataaccaatctattataacaaactacaagacaaaaaatgaacatatgaataaattatagaataataataatgtacctcaactatggctgcagtgtcct |
32334689 |
T |
|
| Q |
223 |
tcacaacacctttgaaatcgtgtaatagagggatctcagattcatttgcctgtttaatataccaaaatagaagtcaaggaaatacttgttttcatgataa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32334688 |
tcacaacacctttgaaatcgtgtaatagagggatctcagattcatttgcctgtttaatataccaaaatagaagtcaaggaaatacttgttttcatgataa |
32334589 |
T |
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| Q |
323 |
atttgaacaaaacaagaaattgacccccaaacaaggcagtcaaattgcaattagacaacttcctcccacaccta |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
32334588 |
atttgaacaaaacaagaaattgacccccaaacaaggcagtcaaattgcaattagacaaattcctccctcaccta |
32334515 |
T |
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