View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_16 (Length: 401)
Name: NF17343_low_16
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_16 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 41572697 - 41572399
Alignment:
| Q |
19 |
gccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtc-ggtggagggtatggtggaggctgtgaaggttatatcga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
41572697 |
gccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtcaggtggagggtacggtggaggctgtgaaggttatatcgt |
41572598 |
T |
|
| Q |
118 |
ggagatgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttca |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572597 |
ggagatgtattcttagccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttca |
41572498 |
T |
|
| Q |
218 |
gcggttttagcagtaaacaagtttgaggctggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41572497 |
gcggttttagcagtaaacaagtttgaggctggggtatgctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagccttatta |
41572399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 27753802 - 27754102
Alignment:
| Q |
16 |
cacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtcgg-tggagggtatggtggaggctgtgaaggttatat |
114 |
Q |
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| T |
27753802 |
cacgccgtagtgtggaatttatggagggtgagaaatgaccgaattttcaaaaatgcggtttatcgggtggaggatacggtggaggctgtgaaggttatgt |
27753901 |
T |
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| Q |
115 |
cgaggagatgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgt |
214 |
Q |
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| T |
27753902 |
cgtggagatggtttcttagccgtttgaaggtgccggcgtgtttgttctacgagtgaagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgt |
27754001 |
T |
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| Q |
215 |
tcagcggttttagcagtaaacaagtttgaggctggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcat |
314 |
Q |
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| T |
27754002 |
tcagcggttttagcagt-aacaagtttgaggctggggtatgctgtttatattgcggtgacccgtgctggttttgtgcagttttgcatatggcagcctcat |
27754100 |
T |
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| Q |
315 |
ta |
316 |
Q |
| |
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|| |
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|
| T |
27754101 |
ta |
27754102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 10909545 - 10909508
Alignment:
| Q |
28 |
tggaatttattgagggtgagaaatgatcgaattttcaa |
65 |
Q |
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| T |
10909545 |
tggagtttatggagggtgagaaatgatcgaattttcaa |
10909508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 315
Target Start/End: Complemental strand, 21942194 - 21941917
Alignment:
| Q |
39 |
gagggtgagaaatgatcgaattttcaaaaatgtggtttgtcgg-tggagggtatggtggaggctgtgaaggttatatcgaggagatgtattcttt-gccg |
136 |
Q |
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||||||||||||||||| ||||||||||||| |||||| || || ||| || ||||||||| |||||||| || ||| ||||||| ||||| |||| |
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| T |
21942194 |
gagggtgagaaatgatcttattttcaaaaatgcagtttgtggggtgaaggatacggtggaggcagtgaaggtaatgtcgtggagatgg-ttcttgagccg |
21942096 |
T |
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| Q |
137 |
tttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaa-tgaggaggtgttcagcggttttagcagtaaac |
235 |
Q |
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||| ||| ||||| |||||||||||||||||||| |||||||||||||||| || ||||||| |||| || | | | || || ||||| |||| || |
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| T |
21942095 |
tttaaagatgccgacgtgtttgttctacgagtggtgttggaatccaaaagcatgtctcttacagtaacggacgggtttctctgcagttttcgcag-ctac |
21941997 |
T |
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| Q |
236 |
aagtttgaggctggggtatcctgtg-tatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatt |
315 |
Q |
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| T |
21941996 |
aagattgaggctggggtatgccgtgttaaattgcggtgacatgtgctgg-tttgtgcaggatggtatatggcagcctcatt |
21941917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 138683 - 138728
Alignment:
| Q |
138 |
ttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaa |
183 |
Q |
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| T |
138683 |
ttgaacgtgccggcttgtttgttttacgagtggagttggaacccaa |
138728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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