View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_18 (Length: 388)
Name: NF17343_low_18
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 50573158 - 50572799
Alignment:
| Q |
18 |
attaacttcaagtggaggacatcgataatatagatacatagtaggaatgtgataaaccnnnnnnngaacaagaacacacctttcttgctgccaatttaga |
117 |
Q |
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| T |
50573158 |
attaacttcgagtggaggacatcaataatatagatacatagtaggaatgtgataaaccaaaaaaagaacaagaacacacctttcttgctgccaatttaga |
50573059 |
T |
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| Q |
118 |
ttgttgctca----tagctcaaatacaaatctaggtaaattagaacagcataagaaacagaattccttcaaagtactatgccaaattatttggttttgca |
213 |
Q |
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| T |
50573058 |
ttgttgctcacttttagctcaaatacaaatctaggtaaattagaacagcataagaaacagaattccttcaaagtactatgccaaattatttggttttgca |
50572959 |
T |
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| Q |
214 |
aaaggaacaatgattagggatatggttatatgttaaacaacacatacaatattggaatacaatgttnnnnnnncataaagcacttcaatgagcaagtgca |
313 |
Q |
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| T |
50572958 |
aaaggaacactgattagggatatggttatatgttaaacaacacatacaatattggaatacaatgttaaaaaaacataaagcacttcaatgagcaagtgca |
50572859 |
T |
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| Q |
314 |
accaaagagcataccatcatgccagaagcagagataagtgcagttgtttttggttctctg |
373 |
Q |
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| T |
50572858 |
accaaagagcataccatcatgccagaagcagagataagtgcagttgtttttggttctctg |
50572799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 50567329 - 50567120
Alignment:
| Q |
18 |
attaacttcaagtggaggacatcgataatatagatacatagtaggaatgtgataaaccnnnnnnngaacaagaacacacctttcttgctgccaatttaga |
117 |
Q |
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| T |
50567329 |
attaacctcgagtggagaacatcgataatatgcatacatagcatgaatgagataaacagataaaagaacaagaacacaccttccttgcagccaatttaga |
50567230 |
T |
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| Q |
118 |
ttgttgctcatag-ctcaaatacaaatctaggtaaattagaacagcataagaaacagaatt----ccttc-aaagtactatgccaaattatttggttttg |
211 |
Q |
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| T |
50567229 |
ctgtttctcattgcctccagtacaaatctagttaaattacaacatcataagaaagagaaattaacccttcaaaagtacaatgtgaaattatttggttttg |
50567130 |
T |
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| Q |
212 |
caaaaggaac |
221 |
Q |
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| T |
50567129 |
caaaacgaac |
50567120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 50567042 - 50566959
Alignment:
| Q |
290 |
aaagcacttcaatgagcaagtgcaaccaaagagcataccatcatgccagaagcagagataagtgcagttgtttttggttctctg |
373 |
Q |
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| T |
50567042 |
aaagcacttcaatgagcaattgcaacaaaagagcacaccatcttcccagaagaatagataagtgcagttgcttttggttttctg |
50566959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 9987095 - 9987153
Alignment:
| Q |
321 |
agcataccatcatgccagaagcagagataagtgcagttgtttttggttctctgctcctc |
379 |
Q |
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| T |
9987095 |
agcataccattttgccagaagcaaagatgagtgcagttgtttttggttctctgatcctc |
9987153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 9986620 - 9986664
Alignment:
| Q |
83 |
gaacaagaacacacctttcttgctgccaatttagattgttgctca |
127 |
Q |
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| T |
9986620 |
gaacaagaacacaccttccttgctgccaatttagactgttgctca |
9986664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 27013277 - 27013225
Alignment:
| Q |
317 |
aaagagcataccatcatgccagaagcagagataagtgcagttgtttttggttc |
369 |
Q |
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| T |
27013277 |
aaagaacataccatcttgccagatgcaaaaataagtgctgttgtttttggttc |
27013225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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