View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_19 (Length: 376)
Name: NF17343_low_19
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 6 - 376
Target Start/End: Original strand, 39447018 - 39447388
Alignment:
| Q |
6 |
gacatcatcactgcagtcatgaaaacacatgccttcccacaccttcacttcttattctctactttggacttctcactttcttcccatgtcttcaatagca |
105 |
Q |
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| T |
39447018 |
gacatcatcactgcagtcatgaaaacacatgccttcccacaccttcacttcttattctctactttggacttctcactttcttcccatgtcttcaatagca |
39447117 |
T |
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| Q |
106 |
aaacctgtataccgcataaatgcataaagacacttgtttatgaagataaatgctacgnnnnnnnntaattattggttaaccatcacatctagaaaacata |
205 |
Q |
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| T |
39447118 |
aaacctgtataccgcataaatgcataaagacacttgtttatgaagataaatgctatgaaaaaaaataattattggttaaccatcacatctagaaaacata |
39447217 |
T |
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| Q |
206 |
tttgaagagaggagctagtaagtataatcatatattcatgttacgaaggaatatataaaaatgtgacagcaagaacttatgcatgtaatagccatgtgtc |
305 |
Q |
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| T |
39447218 |
tttgaagagaggagctagtaagtataatcatatattcatgttacgaaggaatatataaaaatgtgacagcaagaacttatgcatgtaatagccatgtgtc |
39447317 |
T |
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| Q |
306 |
ttagatattacatgatacagaaacatgaaggatagttcacaaattgacaataactcaagtggttaagaaac |
376 |
Q |
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| T |
39447318 |
ttagatattacatgatacagaaacatgaaggatagttcacaaattgacaataactcaagtggttaagaaac |
39447388 |
T |
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Back To:
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Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 94 - 265
Target Start/End: Complemental strand, 27283304 - 27283127
Alignment:
| Q |
94 |
tcttcaatagcaaaacctgtataccgcataaatgcataaagaca----cttgtttatgaagataaatgctacgnnnnnnnntaattattggttaaccatc |
189 |
Q |
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| T |
27283304 |
tcttcaatagcaaaacctgtataccacataaatgcataaagaacgaagcttgtttatgaagataaatgctatgacaaaaa--aattattgggtaaccatc |
27283207 |
T |
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| Q |
190 |
acatctagaaaacatatttgaagagaggagctag----taagtataatcatatattcatgttacgaaggaatatataaaa |
265 |
Q |
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| T |
27283206 |
atatctagaaaacatatttgaatagatgagctagtaattaagtataaacatatattcatgttaccaaggaatatataaaa |
27283127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 9761757 - 9761669
Alignment:
| Q |
266 |
atgtgacagcaagaacttatgcatgtaatagccatgtgtcttagatattacatgatacagaaacatgaaggatagttcacaaattgaca |
354 |
Q |
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| T |
9761757 |
atgtgacggcaagaatcgatccatgtattggccatgtgtcttagatattagatgatgtagaaacatgaaggatagttcacaaagtgaca |
9761669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 9774761 - 9774708
Alignment:
| Q |
47 |
ccttcacttc-ttattctctactttggacttctcactttcttcccatgtcttca |
99 |
Q |
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| T |
9774761 |
ccttcacttccttattctctactctagagttctcactttcttcccatgtattca |
9774708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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