View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_22 (Length: 338)
Name: NF17343_low_22
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 28960341 - 28960627
Alignment:
| Q |
12 |
acagactcagaagaaacaacaaacagcatggaacaatcttcctcaacaccaaaccgttcaccacctcgtcgaccactttactatgttcaaagtccttcaa |
111 |
Q |
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| T |
28960341 |
acagactcagaagaaacaacaaacagcatggaacaatcttcctcaacaccaaaccgttcaccacctcgtcgaccactttactatgttcaaagtccttcaa |
28960440 |
T |
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| Q |
112 |
accatgatgttgaaaaaatgtcctatggttcttctcctgcaggttcaccacctcaccaaaattttcactactatctttcttctcctattcaccactcccg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
28960441 |
accatgatgttgaaaaaatgtcctatggttcttctcctgcaggttcaccacctcaccaaaattttcactactatctttcttcccctattcaccactctcg |
28960540 |
T |
|
| Q |
212 |
tgaatcttctacttctcgttactctgcttccttgaaaaaccctaggatttcttcttcttggaagaagctgaataatagaaatggtgg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28960541 |
tgaatcttctacttctcgttactctgcttccttgaaaaaccctaggatttcttcttcttggaagaagctaaataatagaaatggtgg |
28960627 |
T |
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