View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_24 (Length: 337)
Name: NF17343_low_24
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 319
Target Start/End: Original strand, 1407201 - 1407514
Alignment:
| Q |
6 |
agcagcacagacccttggtaaagcatgataataataattccaccttatcatgtcaccgtatatattgacaataaccaaaagtgtaaaagtagattgaata |
105 |
Q |
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| T |
1407201 |
agcagcacatacccttggtaaagcatgataataataattccaccttatcatgtcaccgtatatattgacaataaccaaaagtgtaaaagtagattgaata |
1407300 |
T |
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| Q |
106 |
taccaccttttatacaatcaaaattctaaaggaaaaagaagaagaaaaataaatagatatgcttggaccgaccaattacatcatacacgtaatattcttc |
205 |
Q |
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| T |
1407301 |
taccaccatttatacaatcaaaattctaaaggaaaaagaagaagaaaaataaatagatatgcttggaccgaccaattacatcatacacgtaatattcttc |
1407400 |
T |
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| Q |
206 |
atatcattcatacattccttggggataaagagtgctattaaactcatccatgataaaacggaaacagggagacatagaaagatacagaaagatagtgaaa |
305 |
Q |
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| T |
1407401 |
atatcattcatacattccttggggataaagagtgctattaaactcatccatgataaaacggaaacagggagacatagaaagatacagaaagatagtgaaa |
1407500 |
T |
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| Q |
306 |
gttgatgtagagtt |
319 |
Q |
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| T |
1407501 |
gttgatgtagagtt |
1407514 |
T |
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