View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_25 (Length: 331)
Name: NF17343_low_25
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 14304131 - 14304428
Alignment:
| Q |
17 |
tccgaaactgaaaaacattactattcttcgatcgatatgcagtgaagcaaaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacata |
116 |
Q |
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| T |
14304131 |
tccgaaactgaaaaacattactattcttcgatcgatatgcagtgaagcagaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacata |
14304230 |
T |
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| Q |
117 |
gctatacataagagccaatgcagcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaaatctgagagttgttgagcatcaacagcc |
216 |
Q |
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| T |
14304231 |
gctatacataagagccaatgcagcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaagtctgagagttgttgagcatcaacagcc |
14304330 |
T |
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| Q |
217 |
atgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaac |
314 |
Q |
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| T |
14304331 |
atgtgattcacaatctgtccagttccatgagcctgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaac |
14304428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 14282376 - 14282670
Alignment:
| Q |
20 |
gaaactgaaaaacattactattcttcgatcgatatgcagtgaagcaaaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacatagct |
119 |
Q |
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| T |
14282376 |
gaaactgaaaactattactactctttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacgccaacatagct |
14282475 |
T |
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| Q |
120 |
atacataagagccaatgcagcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaaatctgagagttgttgagcatcaacagccatg |
219 |
Q |
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| T |
14282476 |
atacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgagagttgttgagcatcaacagccatg |
14282575 |
T |
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| Q |
220 |
tgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaac |
314 |
Q |
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| T |
14282576 |
tgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaac |
14282670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 14320595 - 14320818
Alignment:
| Q |
90 |
tgctgcaacgacagatacaccaacatagctatacataagagccaatgcagcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaaa |
189 |
Q |
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| T |
14320595 |
tgctgcaagtactgatagaccaacatagctgtacataagagccaatgcagcaccaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaa |
14320694 |
T |
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| Q |
190 |
tctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaa |
289 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14320695 |
tctgagagctgttgagcatcaacagccatgtgattaacaatttggccagttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaa |
14320794 |
T |
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| Q |
290 |
ccgaagtgattatgctcgagcgaa |
313 |
Q |
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| T |
14320795 |
ctgaagtgattatgctcgaacgaa |
14320818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 25885277 - 25885500
Alignment:
| Q |
90 |
tgctgcaacgacagatacaccaacatagctatacataagagccaatgcagcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaaa |
189 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||| | || ||||| |||||||||| ||| ||||| |||| |||| |||||| | |
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| T |
25885277 |
tgctgcaagtactgatacaccaacatagctatacataagagccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgcatcatcata |
25885376 |
T |
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| Q |
190 |
tctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaa |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
25885377 |
tctgagagttgttgagcatcaacagccatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccctttttgtaaa |
25885476 |
T |
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| Q |
290 |
ccgaagtgattatgctcgagcgaa |
313 |
Q |
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| T |
25885477 |
ccgaagtaattatgctcgaacgaa |
25885500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 145 - 313
Target Start/End: Original strand, 44349177 - 44349345
Alignment:
| Q |
145 |
acttgtaatggcatcatccaaataggatgaaactgcttcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccat |
244 |
Q |
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||||| |||||||||| ||| ||||| |||| |||| |||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |
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| T |
44349177 |
acttgcaatggcatcaaccatatagggtgaagctgcatcatcatatctgagagttgttgagcatcaacagacatgtgattcactatctgtcctgttccat |
44349276 |
T |
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| Q |
245 |
gagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaa |
313 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |||| |
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| T |
44349277 |
gagcttgtcttgaagaacttgacaatcttagaccctttttgtaaaccaaagtgattatgctcgaacgaa |
44349345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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