View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17343_low_28 (Length: 302)

Name: NF17343_low_28
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17343_low_28
NF17343_low_28
[»] chr3 (7 HSPs)
chr3 (1-287)||(40040724-40041010)
chr3 (1-287)||(37917975-37918261)
chr3 (1-170)||(14181615-14181784)
chr3 (84-234)||(14968272-14968421)
chr3 (84-169)||(10902947-10903032)
chr3 (15-66)||(10902984-10903035)
chr3 (14-66)||(14968373-14968425)
[»] chr2 (3 HSPs)
chr2 (1-168)||(29112709-29112877)
chr2 (84-161)||(25593673-25593750)
chr2 (15-66)||(25593702-25593753)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-169)||(75476-75645)
[»] chr1 (3 HSPs)
chr1 (1-154)||(20192686-20192840)
chr1 (84-169)||(25093353-25093438)
chr1 (15-66)||(25093390-25093441)
[»] chr8 (3 HSPs)
chr8 (1-168)||(18119568-18119735)
chr8 (84-169)||(22884245-22884330)
chr8 (15-66)||(22884282-22884333)
[»] chr4 (1 HSPs)
chr4 (1-169)||(12135318-12135486)
[»] chr5 (2 HSPs)
chr5 (84-169)||(19872431-19872516)
chr5 (15-66)||(19872468-19872519)
[»] scaffold0205 (1 HSPs)
scaffold0205 (84-160)||(5002-5080)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 40040724 - 40041010
Alignment:
Q  1 ttcatgcatacatgttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatggattttatatccatgttaatgatgtttttgttgca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40040724 ttcatgcatacatgttgatgatgtttttgttgcatcatgagttgaagactttgtcgtagttgatggattttatatccgtgttaatgatgtttttgttgca 40040823  T
Q  101 tcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataatcatgatttggaatgagtcataaatgctttt 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  40040824 tcatgagttgacgactttgtcgtagttgatggtatcgtgtgcatatagaaatcgtgtctaagtgcataatgatgatttggaatgagtcataaatgttttt 40040923  T
Q  201 atgctcgttgttgatatgattggtgattgacttaattgtgacataattgaatatgtgacattggtgaaatttgttgaatgtcgtgat 287  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40040924 atgctcgttgttgatgtgattggtgattgacttaattgtgacataattgaatatgtgacattggtgaaatttgttgaatgtcgtgat 40041010  T

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Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 37917975 - 37918261
Alignment:
Q  1 ttcatgcatacatgttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatggattttatatccatgttaatgatgtttttgttgca 100  Q
    |||||||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  37917975 ttcatgcacacatgttgatgatgtttttgttgcatcatgggttgacgactttgtcgtagttgatgaattttatatccgtgttaatgatgtttttgttgca 37918074  T
Q  101 tcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataatcatgatttggaatgagtcataaatgctttt 200  Q
    |||||| || |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37918075 tcatgacttgacgactttgtcgtagttgatgggaccgtgtgcatatagaagtcgtatctaagtgcataatcatgatttggaatgagtcataaatgctttt 37918174  T
Q  201 atgctcgttgttgatatgattggtgattgacttaattgtgacataattgaatatgtgacattggtgaaatttgttgaatgtcgtgat 287  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37918175 atgctcgttgttgatgtgattggtgattgacttaattgtgacataattgaatatgtgacattggtgaaatttgttaaatgtcgtgat 37918261  T

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Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 14181615 - 14181784
Alignment:
Q  1 ttcatgcatacatg-ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatggattttatatccatgttaatgatgtttttgttgc 99  Q
    |||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  14181615 ttcatgcatacatggttaatgatgtttttgttgcatcatgagttgacgactttgtcgtagttgatggattttatatccgtgttgatgatg-ttttgttgc 14181713  T
Q  100 atcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataat 170  Q
    ||||| |||| |||||||||||||||||||||||| | ||| ||||||||||||| || || |||||||||    
T  14181714 atcataagttgacgactttgtcgtagttgatggtaccttgtacatatagaagtcgcgtttaggtgcataat 14181784  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 234
Target Start/End: Complemental strand, 14968421 - 14968272
Alignment:
Q  84 atgatgtttttgttgcatcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataatcatgatttggaat 183  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||| ||||    
T  14968421 atgatgtttttgttggataatgagttgacgactttgtcgtagttgatggtaccgtgtacatagagaagtcgtgtctaagcgcat-atcatgattttgaat 14968323  T
Q  184 gagtcataaatgcttttatgctcgttgttgatatgattggtgattgactta 234  Q
    ||||||||| ||||||| |||||  ||||||| ||||||||||||| ||||    
T  14968322 gagtcataattgcttttgtgctctgtgttgatgtgattggtgattggctta 14968272  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 10903032 - 10902947
Alignment:
Q  84 atgatgtttttgttgcatcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataa 169  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  10903032 atgatgtttttgttgcatcatgagttgacgactttgttgtagttgatggtaccgtgtacatatagaagtcgtgtctaagtgcataa 10902947  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 10903035 - 10902984
Alignment:
Q  15 ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatgg 66  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  10903035 ttgatgatgtttttgttgcatcatgagttgacgactttgttgtagttgatgg 10902984  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 14968425 - 14968373
Alignment:
Q  14 gttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatgg 66  Q
    ||||||||||||||||||| || || |||||| ||||||||||||||||||||    
T  14968425 gttgatgatgtttttgttggataatgagttgacgactttgtcgtagttgatgg 14968373  T

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Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 29112877 - 29112709
Alignment:
Q  1 ttcatgcatacatg-ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatggattttatatccatgttaatgatgtttttgttgc 99  Q
    |||||||||||||| || ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29112877 ttcatgcatacatgattaatgatgtttttgttgcatcatgagttgacgagtttgtcgtagttgatggattttatatccgtgttaatgatgtttttgttgc 29112778  T
Q  100 atcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcata 168  Q
    |||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||| || |||||||    
T  29112777 atcatgagttgacgaatttgtcgtagttgatggtaccgtgtacatatagaagtcgtgtttaggtgcata 29112709  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 25593750 - 25593673
Alignment:
Q  84 atgatgtttttgttgcatcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaa 161  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  25593750 atgatgtttttgttgcatcatgagttgacgactttgtcgtagttgatggtaccgtgtacatatagaagtcgcgtctaa 25593673  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 25593753 - 25593702
Alignment:
Q  15 ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatgg 66  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  25593753 ttgatgatgtttttgttgcatcatgagttgacgactttgtcgtagttgatgg 25593702  T

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Target: scaffold0047 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 75645 - 75476
Alignment:
Q  1 ttcatgcatacatg-ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatggattttatatccatgttaatgatgtttttgttgc 99  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  75645 ttcatgcatacatggttgatgatgtttttgttgcatcatgagttgacgactttgtcgtagttgatggattttatatccgtgttgatgatgtttttgttgc 75546  T
Q  100 atcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataa 169  Q
    |||||||||| |||||||||||||||||||||||| ||| | ||| ||||||||| || || ||||||||    
T  75545 atcatgagttgacgactttgtcgtagttgatggtaccgtatacatgtagaagtcgcgtttaggtgcataa 75476  T

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Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 20192840 - 20192686
Alignment:
Q  1 ttcatgcatacatg-ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatggattttatatccatgttaatgatgtttttgttgc 99  Q
    |||||||||||||| || ||| |||||||||| |||||| |||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  20192840 ttcatgcatacatggttaatgttgtttttgtttcatcatgagttgacgactttgtcgtagttgatggattttacatccgtgttaatgatgtttttgttgc 20192741  T
Q  100 atcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcg 154  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  20192740 atcatgagttgacgactttgtcgtagttgatggtaccgtgtacatatagaagtcg 20192686  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 25093438 - 25093353
Alignment:
Q  84 atgatgtttttgttgcatcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataa 169  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||  |||| ||||||||||||| ||||||||||||||    
T  25093438 atgatgtttttgttgcatcatgagttgacgactttgtcatagttgatggtactgtgtacatatagaagtcgcgtctaagtgcataa 25093353  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 25093441 - 25093390
Alignment:
Q  15 ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatgg 66  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||||||||    
T  25093441 ttgatgatgtttttgttgcatcatgagttgacgactttgtcatagttgatgg 25093390  T

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Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 18119568 - 18119735
Alignment:
Q  1 ttcatgcatacatg-ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatggattttatatccatgttaatgatgtttttgttgc 99  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  18119568 ttcatgcatacatggttgatgatgtttt-gttgcatcatgagttgacgacattgtcgtagttgatggattttatatccgtgttaatgatattttagttgc 18119666  T
Q  100 atcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcata 168  Q
    |||||||||| ||||| ||||| |||||||||||| ||||| |||  || ||||||||||| |||||||    
T  18119667 atcatgagttgacgacattgtcttagttgatggtaccgtgttcatgaaggagtcgtgtctaggtgcata 18119735  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 22884330 - 22884245
Alignment:
Q  84 atgatgtttttgttgcatcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataa 169  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| || |||||| ||||||||||||||||||    
T  22884330 atgatgtttttgttgcataatgagttgacgactttgtcgtagttgatggtaccgtgtacacatagaaatcgtgtctaagtgcataa 22884245  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 22884333 - 22884282
Alignment:
Q  15 ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatgg 66  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||||||    
T  22884333 ttgatgatgtttttgttgcataatgagttgacgactttgtcgtagttgatgg 22884282  T

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Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 12135318 - 12135486
Alignment:
Q  1 ttcatgcatacatgttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatggattttatatccatgttaatgatgtttttgttgca 100  Q
    |||||| |||||||| | |||||||||||||||||||  |||||| ||| |||| ||||||||| |||||||||||| |||| |||||||||||||||||    
T  12135318 ttcatgtatacatgtcggtgatgtttttgttgcatcacgagttgacgacattgttgtagttgatagattttatatccgtgttgatgatgtttttgttgca 12135417  T
Q  101 tcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataa 169  Q
    ||  ||||| |||||||||||||||||||||||||||||| ||| ||||||||| || || ||||||||    
T  12135418 tcgcgagttgacgactttgtcgtagttgatggtatcgtgtacatgtagaagtcgcgtttaggtgcataa 12135486  T

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Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 19872516 - 19872431
Alignment:
Q  84 atgatgtttttgttgcatcatgagttaacgactttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtctaagtgcataa 169  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||| |||||||| |||||    
T  19872516 atgatgtttttgttgcatcatgagttgacgactttgttgtagttgatggtaccgtgtacatatagaagtcgcgtctaagtacataa 19872431  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 19872519 - 19872468
Alignment:
Q  15 ttgatgatgtttttgttgcatcattagttgaagactttgtcgtagttgatgg 66  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  19872519 ttgatgatgtttttgttgcatcatgagttgacgactttgttgtagttgatgg 19872468  T

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Target: scaffold0205 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 5080 - 5002
Alignment:
Q  84 atgatgtttttgttgcatcatgagttaacgac--tttgtcgtagttgatggtatcgtgtgcatatagaagtcgtgtcta 160  Q
    |||||||||||||||||||||||| | |||||   |||| || | |||||||| ||||| ||||||| |||||||||||    
T  5080 atgatgtttttgttgcatcatgaggtgacgacctgttgttgttggtgatggtaccgtgtccatataggagtcgtgtcta 5002  T

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