View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17343_low_3 (Length: 640)

Name: NF17343_low_3
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17343_low_3
NF17343_low_3
[»] chr3 (1 HSPs)
chr3 (15-625)||(49938339-49938948)
[»] chr1 (1 HSPs)
chr1 (191-303)||(1909754-1909866)


Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 15 - 625
Target Start/End: Original strand, 49938339 - 49938948
Alignment:
Q  15 agcataggtcttggaaaatccaatgtataagtagtaatcaagcggaagaattcaaactcatgcatatgcagatcaaactcaatcccatcaacagtaaatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49938339 agcataggtcttggaaaatccaatgtataagtagtaatcaagcggaagaattcaaactcatgcatatgcagatcaaactcaatcccatcaacagtaaatg 49938438  T
Q  115 gaatggcttttggacaaaactcttctcttgtaagagaaatatcatcagaatgagatgttggaactttcatatacaaatcaaatgcagctgaagcagaatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49938439 gaatggcttttggacaaaactcttctcttgtaagagaaatatcatcagaatgagatgttggaactttcatatacaaatcaaatgcagctgaagcagaatt 49938538  T
Q  215 aaccgtaacgaaatcatgcgagattatgacatctcctctagcatcactaaaagacccttctgccaaaggtgcagtccagtgtatatcaagcattctgtat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49938539 aaccgtaacgaaatcatgcgagattatgacatctcctctagcatcactaaaagacccttctgccaaaggtgcagtccagtgtatatcaagcattctgcat 49938638  T
Q  315 ggaatataaaatgagaaaacaattttgataaaacaaatcacattagagacgagaaagaattattttgtaagacaacttgaagagacagccatggtgagga 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  49938639 ggaatataaaatgagaaaacaattttgataaaacaaatcacattagagacgagaaagaatta-ttggtaagacaacttgaagagacagccatggtgagga 49938737  T
Q  415 aggaaaggaatgcaaatgcagataatttaattgtataataagcaaaaaatgttgtcgatgctttatcaactaaaactatttatcaaaactgaaaagggga 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49938738 aggaaaggaatgcaaatgcagataatttaattgtataataagcaaaaaatgttgtcgatgctttatcaactaaaactatttatcaaaactgaaaagggga 49938837  T
Q  515 ctgacttacggtcttgaaagagatcccaaaacttttgtctctccatgtaatacccctagtttgaatggcatcaaactatgataattgggaatgtaattga 614  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  49938838 ctgacttacggtcttgaaagagatcccgaaacttttgtctctccatgtaatacccctagtttgaatggcatcaaactatgataattatgaatgtaattga 49938937  T
Q  615 acaatattttt 625  Q
     ||| ||||||    
T  49938938 gcaagattttt 49938948  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 191 - 303
Target Start/End: Complemental strand, 1909866 - 1909754
Alignment:
Q  191 atcaaatgcagctgaagcagaattaaccgtaacgaaatcatgcgagattatgacatctcctctagcatcactaaaagacccttctgccaaaggtgcagtc 290  Q
    |||||||||||||||||  ||||| || |||| ||| || || |||||||||| |||||||| |||||| | |||||||||||||||   |||||| |||    
T  1909866 atcaaatgcagctgaagaggaattcacagtaatgaactcgtgtgagattatgatatctcctcgagcatcgccaaaagacccttctgcggtaggtgccgtc 1909767  T
Q  291 cagtgtatatcaa 303  Q
    || | ||||||||    
T  1909766 cattttatatcaa 1909754  T

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