View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17343_low_30 (Length: 299)

Name: NF17343_low_30
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17343_low_30
NF17343_low_30
[»] chr1 (10 HSPs)
chr1 (61-284)||(18839245-18839467)
chr1 (127-252)||(17323787-17323913)
chr1 (127-284)||(50248973-50249131)
chr1 (127-191)||(25251749-25251813)
chr1 (127-227)||(17186586-17186686)
chr1 (127-191)||(25248988-25249052)
chr1 (199-282)||(25251678-25251762)
chr1 (199-282)||(25248917-25249001)
chr1 (122-191)||(31489724-31489793)
chr1 (127-159)||(16430825-16430857)
[»] chr8 (8 HSPs)
chr8 (122-284)||(27107296-27107458)
chr8 (127-284)||(26774980-26775138)
chr8 (127-191)||(33541860-33541924)
chr8 (199-261)||(33541810-33541873)
chr8 (127-208)||(15186164-15186245)
chr8 (175-241)||(14477099-14477166)
chr8 (219-254)||(13858912-13858947)
chr8 (218-257)||(14419617-14419656)
[»] chr6 (13 HSPs)
chr6 (127-260)||(13056951-13057085)
chr6 (127-261)||(3630286-3630420)
chr6 (127-256)||(13039511-13039641)
chr6 (127-261)||(3632360-3632492)
chr6 (152-260)||(25477056-25477165)
chr6 (127-284)||(10583884-10584041)
chr6 (127-212)||(24338941-24339026)
chr6 (130-214)||(22490420-22490504)
chr6 (127-214)||(13870820-13870907)
chr6 (182-284)||(24338847-24338950)
chr6 (235-284)||(20219994-20220043)
chr6 (152-202)||(20219939-20219989)
chr6 (243-284)||(22113986-22114027)
[»] chr3 (16 HSPs)
chr3 (127-260)||(43423865-43423998)
chr3 (127-284)||(28100438-28100596)
chr3 (122-261)||(43421834-43421974)
chr3 (124-284)||(28102399-28102561)
chr3 (127-284)||(1627080-1627238)
chr3 (122-284)||(36011524-36011687)
chr3 (127-214)||(5927235-5927322)
chr3 (127-211)||(8183163-8183247)
chr3 (127-191)||(28137765-28137829)
chr3 (199-284)||(28137692-28137778)
chr3 (127-201)||(7754065-7754139)
chr3 (187-260)||(54883946-54884026)
chr3 (127-282)||(53468854-53469000)
chr3 (219-257)||(23633255-23633293)
chr3 (219-257)||(23636822-23636860)
chr3 (218-253)||(28761856-28761891)
[»] chr4 (6 HSPs)
chr4 (127-284)||(38270385-38270541)
chr4 (122-284)||(6132644-6132807)
chr4 (152-257)||(3937634-3937739)
chr4 (127-191)||(47564500-47564564)
chr4 (127-164)||(27498967-27499004)
chr4 (127-161)||(2891136-2891170)
[»] chr7 (8 HSPs)
chr7 (127-258)||(27833059-27833191)
chr7 (127-260)||(39146389-39146522)
chr7 (127-273)||(21677798-21677945)
chr7 (127-284)||(21679759-21679917)
chr7 (127-214)||(24748348-24748435)
chr7 (199-261)||(44724383-44724446)
chr7 (127-193)||(44724332-44724398)
chr7 (127-191)||(22829105-22829169)
[»] chr2 (8 HSPs)
chr2 (127-260)||(3021841-3021974)
chr2 (122-260)||(15539898-15540038)
chr2 (127-282)||(34979980-34980136)
chr2 (127-284)||(14836973-14837130)
chr2 (184-260)||(38019918-38019996)
chr2 (199-260)||(11739962-11740025)
chr2 (127-191)||(22163419-22163483)
chr2 (127-193)||(11740010-11740076)
[»] chr5 (7 HSPs)
chr5 (127-284)||(24126581-24126736)
chr5 (152-284)||(10474722-10474856)
chr5 (128-284)||(2723698-2723847)
chr5 (127-226)||(20042772-20042871)
chr5 (127-185)||(20044759-20044817)
chr5 (127-191)||(695633-695697)
chr5 (142-284)||(17072619-17072763)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 18839245 - 18839467
Alignment:
Q  61 catgacctacaatggcactttgaaaacaaagaaaaacaacagaactaacaactttaaagagaattcttgtgaaagtgcctcaaaattgaataaattggaa 160  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18839245 catgacctgcaatggtactttgaaaacaaagaaaaacaacagaactaacaactttaaagagaattattgtgaaagtgcctcaaaattgaataaattggaa 18839344  T
Q  161 ttctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgttttttgtctgttggttcggcaaaaatcggtggccgattt 260  Q
    |||| ||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  18839345 ttctggtaacagaaaatcgatggccga-tttcagagcacggtggccgattttggactctgttttttgcctgttggttcggcaaaaatcggtggccgattt 18839443  T
Q  261 gaagcattcagtggccgattttga 284  Q
    | ||||||| ||||||||||||||    
T  18839444 ggagcattcggtggccgattttga 18839467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 127 - 252
Target Start/End: Original strand, 17323787 - 17323913
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactct-gttttt 225  Q
    |||||||||||||||||||||||| ||||||||||||| | || |||||||||||| ||||||||||| || ||||||||||||||   |||| ||||||    
T  17323787 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcggtgaccgattttcagggctcggtggccgattttatgctctggttttt 17323886  T
Q  226 tgtctgttggttcggcaaaaatcggtg 252  Q
    |||||||||||||||||||||||||||    
T  17323887 tgtctgttggttcggcaaaaatcggtg 17323913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 127 - 284
Target Start/End: Complemental strand, 50249131 - 50248973
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||||||||||||| ||||||||||||| | ||| |||||||||  || ||||||||| ||||||||||||||||||| || | || |||    
T  50249131 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggccgctgattttcagggcacggtggccgattttgacctgttttattt 50249032  T
Q  227 g-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    |  ||   |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  50249031 gagcttcaggttcggcaaaaatcggtggccgatttggagcattcggtggccgattttga 50248973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 25251813 - 25251749
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  25251813 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcggtggccgatttt 25251749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 17186686 - 17186586
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    ||||||||| | |||||||||||| |||||| || ||| | ||||||||||||||||| ||||||||| || |||||||||| |||  ||||||||||||    
T  17186686 ttgtgaaagcgactcaaaattgaagaaattgaaaatctggaagcagaaaatcggtggctgattttcagggctcggtggccgaattttcactctgtttttt 17186587  T
Q  227 g 227  Q
    |    
T  17186586 g 17186586  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 25249052 - 25248988
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    |||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  25249052 ttgtgatagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcggtggccgatttt 25248988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 25251762 - 25251678
Alignment:
Q  199 cggtggccgattttgaactctgtttttt-gtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgatttt 282  Q
    ||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||  ||||||||||||    
T  25251762 cggtggccgattttgagtgctgtttttttgtctgttggttcggcaaaaatcggtggccaatttggagcatttggtggccgatttt 25251678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 25249001 - 25248917
Alignment:
Q  199 cggtggccgattttgaactctgtttttt-gtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgatttt 282  Q
    ||||||||||||||||   ||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||| || |||||||||    
T  25249001 cggtggccgattttgagtactgtttttttgtcagttggttcggcaaaaattggtggccgatttggagcattcggtagccgatttt 25248917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 31489724 - 31489793
Alignment:
Q  122 aattcttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    |||| ||| |||||||||| ||||||||| ||||||||||||| | |||||||||| || ||||||||||    
T  31489724 aattgttgcgaaagtgccttaaaattgaagaaattggaattctggaagcagaaaattgggggccgatttt 31489793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 16430825 - 16430857
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattgga 159  Q
    ||||||||||| |||||||||||||||||||||    
T  16430825 ttgtgaaagtgactcaaaattgaataaattgga 16430857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 122 - 284
Target Start/End: Complemental strand, 27107458 - 27107296
Alignment:
Q  122 aattcttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgt 221  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| | ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||    
T  27107458 aattgttgtgaaagtgcctcaaaattgaagaaattagaattctggaagctgaaaatcgatggccgattttcagagcatggtggccgattttggactctgt 27107359  T
Q  222 tttttgtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    ||| || |  |||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  27107358 tttatggcctttggttcggcaaaaatcggtggccgatttggagcattcgatggccgattttga 27107296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 26774980 - 26775138
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctg-ttttt 225  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| | |||| |||||    
T  26774980 ttgtgaaagtgcctcaaaattgaagaaattggaattctggtagcagaaaatcggtggccgattttcagagcacgttgaccgattttggaatctgtttttt 26775079  T
Q  226 tgtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    || |  || ||||||||||| |||||| |||||||| ||||||| ||||||||||||||    
T  26775080 tggcctttagttcggcaaaagtcggtgcccgatttggagcattcggtggccgattttga 26775138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 33541924 - 33541860
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    ||||||||||||||||||||| || ||||||||||||| | ||| ||||||||||||||||||||    
T  33541924 ttgtgaaagtgcctcaaaattaaagaaattggaattctggaagctgaaaatcggtggccgatttt 33541860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 33541873 - 33541810
Alignment:
Q  199 cggtggccgattttgaactctgtttttt-gtctgttggttcggcaaaaatcggtggccgatttg 261  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  33541873 cggtggccgattttggactttgtttttttgtctgttggttcggcaaaaatcggtggctgatttg 33541810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 15186245 - 15186164
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccga 208  Q
    ||||||||||| |||||||||||| |||| |||||| | | |||| ||||||||| | |||||||||| || ||||||||||    
T  15186245 ttgtgaaagtgactcaaaattgaagaaataggaattatggaagcaaaaaatcggtcgtcgattttcagggctcggtggccga 15186164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 14477099 - 14477166
Alignment:
Q  175 aatcggtggccgattttcagagcacggtggccgattttgaactct-gttttttgtctgttggttcggc 241  Q
    |||||||||||||||||||  || |||| |||||||||| ||||| ||||||||| ||||||||||||    
T  14477099 aatcggtggccgattttcaaggctcggtagccgattttgcactctagttttttgtttgttggttcggc 14477166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 13858947 - 13858912
Alignment:
Q  219 tgttttttgtctgttggttcggcaaaaatcggtggc 254  Q
    |||||||||||||||||||||| |||||||||||||    
T  13858947 tgttttttgtctgttggttcggaaaaaatcggtggc 13858912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 14419656 - 14419617
Alignment:
Q  218 ctgttttttgtctgttggttcggcaaaaatcggtggccga 257  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  14419656 ctgttttttgtttgttggttcggcaaaaatctgtggccga 14419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 127 - 260
Target Start/End: Original strand, 13056951 - 13057085
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactct-gttttt 225  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||||||||| || ||||||||||||||| ||||| ||||||    
T  13056951 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaattggtggccgattttcagggctcggtggccgattttgcactctggttttt 13057050  T
Q  226 tgtctgttggttcggcaaaaatcggtggccgattt 260  Q
    |||||||||||||||||||||||||||||||||||    
T  13057051 tgtctgttggttcggcaaaaatcggtggccgattt 13057085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 127 - 261
Target Start/End: Complemental strand, 3630420 - 3630286
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtt-ttt 225  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||| |||||||| |||    
T  3630420 ttgtgaaagtgcctcaaaattgaagaaattggaattctagaagctgaaaatcggtggccgattttcagagcattgtggccgattttggactctgtttttt 3630321  T
Q  226 tgtctgttggttcggcaaaaatcggtggccgatttg 261  Q
    ||| |||||||||||| |||||||||||||||||||    
T  3630320 tgtttgttggttcggc-aaaatcggtggccgatttg 3630286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 13039511 - 13039641
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactct-gttttt 225  Q
    |||||||||||||||||||||||| |||||| |||||| | ||||||||| ||||||||||||||||| || ||||||||||||||| ||||| ||||||    
T  13039511 ttgtgaaagtgcctcaaaattgaagaaattgaaattctggaagcagaaaaccggtggccgattttcagggctcggtggccgattttgcactctggttttt 13039610  T
Q  226 tgtctgttggttcggcaaaaatcggtggccg 256  Q
    ||| |||||||| ||||||||||||||||||    
T  13039611 tgtttgttggtttggcaaaaatcggtggccg 13039641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 127 - 261
Target Start/End: Complemental strand, 3632492 - 3632360
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||||||||||||| ||||||||||||| | ||| |||||||| || |||||||||| ||||||||||||||||||| ||||||||||||    
T  3632492 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcgatgcccgattttcaaagcacggtggccgattttggactctgtttttt 3632393  T
Q  227 gtctgttggttcggcaaaaatcggtggccgatttg 261  Q
     | ||||||||||| ||||||| ||||||||||||    
T  3632392 -tttgttggttcgg-aaaaatcagtggccgatttg 3632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 25477056 - 25477165
Alignment:
Q  152 aaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctg-ttttttgtctgttggttcggcaaaaatcgg 250  Q
    ||||||||||||  | |||| |||| ||||||||||||||||| ||||||||| |||||||  |||||| ||||||||||||||||||||||||||| ||    
T  25477056 aaattggaattccggaagcaaaaaaccggtggccgattttcagggcacggtggtcgattttacactctggttttttgtctgttggttcggcaaaaattgg 25477155  T
Q  251 tggccgattt 260  Q
    ||||||||||    
T  25477156 tggccgattt 25477165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 10583884 - 10584041
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||| ||||||||| ||||||||||||| | ||| ||||| |||||| | |||||||| || | |||||||||||||| || | || |||    
T  10583884 ttgtgaaagtgccttaaaattgaagaaattggaattctggaagctgaaaaccggtggtccattttcagggcgcagtggccgattttgacctgttttattt 10583983  T
Q  227 g-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    |  ||   |||||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  10583984 gagcttcaggttcggcaaaaatcggt-gccgatttggagcattcggtggccgattttga 10584041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 24339026 - 24338941
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgatttt 212  Q
    |||||||||||||||||||||||| |||||| |||||| | ||  ||||||||||||||||||||||| |||||| ||||||||||    
T  24339026 ttgtgaaagtgcctcaaaattgaagaaattgaaattctggaagatgaaaatcggtggccgattttcagggcacggaggccgatttt 24338941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 22490420 - 22490504
Alignment:
Q  130 tgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttga 214  Q
    ||||||||||||||||||||| ||||| |||||||   ||| |||||||| |||||||||||||| |||||||||||||||||||    
T  22490420 tgaaagtgcctcaaaattgaagaaattagaattctgaaagctgaaaatcgatggccgattttcagggcacggtggccgattttga 22490504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 13870907 - 13870820
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttga 214  Q
    |||||||||||||| ||||||||| ||||||||||| | | |||||||||||||||| |||||||||| |  ||||||||||||||||    
T  13870907 ttgtgaaagtgccttaaaattgaagaaattggaattttggaagcagaaaatcggtggtcgattttcagggttcggtggccgattttga 13870820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 24338950 - 24338847
Alignment:
Q  182 ggccgattttcagagcacggtggccgattttgaactctgttttttgt-ctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgatt 280  Q
    ||||||||||||| ||||||||||||||||||| || | || ||||  ||   |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  24338950 ggccgattttcagggcacggtggccgattttgacctgttttatttgagcttcaggttcggcaaaaatcggtggccgatttggagcattcggtggccgatt 24338851  T
Q  281 ttga 284  Q
    ||||    
T  24338850 ttga 24338847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 20219994 - 20220043
Alignment:
Q  235 gttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  20219994 gttcggcaaaaatcgatggccgatttggagcattccgtggccgattttga 20220043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 20219939 - 20219989
Alignment:
Q  152 aaattggaattctagtagcagaaaatcggtggccgattttcagagcacggt 202  Q
    ||||||||||| | | ||| ||||||||||||||||||||||| |||||||    
T  20219939 aaattggaattatggaagctgaaaatcggtggccgattttcagggcacggt 20219989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 22113986 - 22114027
Alignment:
Q  243 aaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||    
T  22113986 aaaatcgatggccgatttggagcattccgtggccgattttga 22114027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 43423998 - 43423865
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||| | |||| ||||||||||||||||| ||||||||||||    
T  43423998 ttgtgaaagtgcctcaaaattgaagaaattggaattctggtagtagaaaaccggtggccgatatccagaccacggtggccgattttggactctgtttttt 43423899  T
Q  227 gtctgttggttcggcaaaaatcggtggccgattt 260  Q
    || |||| ||||||||||||||||||||||||||    
T  43423898 gtttgttagttcggcaaaaatcggtggccgattt 43423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 284
Target Start/End: Complemental strand, 28100596 - 28100438
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactct-gttttt 225  Q
    |||||||||||||||||||||||| ||||||||||||| | || ||||||||| |||||||||||||| |   |||||||||||||| ||||| ||||||    
T  28100596 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcgatggccgattttcagggattggtggccgattttgcactctggttttt 28100497  T
Q  226 tgtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    |||  |||||||||||||||||||| |||||||||| ||||||  ||||||||||||||    
T  28100496 tgttcgttggttcggcaaaaatcggcggccgatttggagcatttggtggccgattttga 28100438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 43421974 - 43421834
Alignment:
Q  122 aattcttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgt 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||  ||||||||||||   ||||||||||||| |  |||||||||||||||| |||||||    
T  43421974 aattgttgtgaaagtgcctcaaaattgaagaaattggaattcaggtagcagaaaataaatggccgattttcaaactacggtggccgattttggactctgt 43421875  T
Q  222 t-ttttgtctgttggttcggcaaaaatcggtggccgatttg 261  Q
    | |||||||||||||||||||||||||| ||||||||||||    
T  43421874 ttttttgtctgttggttcggcaaaaatcagtggccgatttg 43421834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 124 - 284
Target Start/End: Complemental strand, 28102561 - 28102399
Alignment:
Q  124 ttcttgtgaaagtgcctcaaaattgaataaatt-ggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctg-t 221  Q
    ||||||||||||||||||||||||||||||||| ||||||||   ||||||||||||| ||| ||||||||  |  ||||||||||||||| |||| | |    
T  28102561 ttcttgtgaaagtgcctcaaaattgaataaatttggaattctgaaagcagaaaatcgggggctgattttcaaggttcggtggccgattttgcactcgggt 28102462  T
Q  222 tttttgtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    ||||||||||||||||||| |||||||||  |  |||||| ||||||||||||||||||||||    
T  28102461 tttttgtctgttggttcggaaaaaatcggcagttgatttggagcattcagtggccgattttga 28102399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 284
Target Start/End: Complemental strand, 1627238 - 1627080
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||||||||  ||| |||||||||||||| || | || |||    
T  1627238 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggccgattttcaggacacagtggccgattttgacctgttttattt 1627139  T
Q  227 g-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    |  ||   |||||||||||||||||||||||||||| ||||||| ||||| || |||||    
T  1627138 gagcttcaggttcggcaaaaatcggtggccgatttggagcattcggtggcagactttga 1627080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 36011524 - 36011687
Alignment:
Q  122 aattcttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgt 221  Q
    |||| |||||||||||||||||||||||| ||||||||| ||| | ||  |||||||||||||| |||||||  ||||||||||||||||||| || | |    
T  36011524 aattgttgtgaaagtgcctcaaaattgaagaaattggaaatctggaaggtgaaaatcggtggccaattttcaaggcacggtggccgattttgacctgttt 36011623  T
Q  222 tttttg-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    | ||||  ||   |||||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  36011624 tatttgagcttcaggttcggcaaaaatcggtggccgatttggagcattaggtggtcgattttga 36011687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 5927322 - 5927235
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttga 214  Q
    |||||||||||||| ||||||||| ||||||||||| | | ||| ||||||||||||| |||||||||||||||||||||||||||||    
T  5927322 ttgtgaaagtgccttaaaattgaagaaattggaattttggaagctgaaaatcggtggctgattttcagagcacggtggccgattttga 5927235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 8183247 - 8183163
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattt 211  Q
    |||||||||||||||||||||||| |||||| ||||||  |||||||||||| |||  |||||||||||||||||||||||||||    
T  8183247 ttgtgaaagtgcctcaaaattgaagaaattgaaattctgatagcagaaaatcagtgatcgattttcagagcacggtggccgattt 8183163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 28137829 - 28137765
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    |||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||    
T  28137829 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcggtggccgatttt 28137765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 28137778 - 28137692
Alignment:
Q  199 cggtggccgattttgaactctg-ttttttgtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    ||||||||||||||| |||||| |||||||| | ||||||||||||||||| | | |||||||| ||||||| ||||||||||||||    
T  28137778 cggtggccgattttgcactctggttttttgtttattggttcggcaaaaatcagcgaccgatttggagcattcggtggccgattttga 28137692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 7754065 - 7754139
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacgg 201  Q
    ||||||||||| |||||||||||| ||||||||||||| | |||  ||||||| |||||||||||||| ||||||    
T  7754065 ttgtgaaagtggctcaaaattgaagaaattggaattctggaagctaaaaatcgctggccgattttcagggcacgg 7754139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 54883946 - 54884026
Alignment:
Q  187 attttcagagcacggtggccgattttgaactctgtttttt-------gtctgttggttcggcaaaaatcggtggccgattt 260  Q
    ||||||||||||| |||||||||||| |||||||||||||       |||| |||||||||||||||||||||||||||||    
T  54883946 attttcagagcacagtggccgattttcaactctgtttttttttttttgtctattggttcggcaaaaatcggtggccgattt 54884026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 53469000 - 53468854
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||||||||||||| ||||| ||||||||  |||          |||||||||||||| ||||||||||||||||||| |  | || |||    
T  53469000 ttgtgaaagtgcctcaaaattgaagaaattagaattctataagc----------tggccgattttcagggcacggtggccgattttgaccatttttattt 53468911  T
Q  227 gt-ctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgatttt 282  Q
    |  ||   ||||||||||||| |||||||||| ||| ||||||| ||||||||||||    
T  53468910 gagcttcaggttcggcaaaaaccggtggccgagttggagcattcggtggccgatttt 53468854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 23633255 - 23633293
Alignment:
Q  219 tgttttttgtctgttggttcggcaaaaatcggtggccga 257  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  23633255 tgtttttcgtctgttggttcggcaaaaatcggtggccga 23633293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 23636822 - 23636860
Alignment:
Q  219 tgttttttgtctgttggttcggcaaaaatcggtggccga 257  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23636822 tgttttttgtctgttggttcagcaaaaatcggtggccga 23636860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 28761891 - 28761856
Alignment:
Q  218 ctgttttttgtctgttggttcggcaaaaatcggtgg 253  Q
    ||||||||||||||||||||||||||||||| ||||    
T  28761891 ctgttttttgtctgttggttcggcaaaaatccgtgg 28761856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 127 - 284
Target Start/End: Complemental strand, 38270541 - 38270385
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||| | |||||||||| ||| | ||||||    
T  38270541 ttgtgaaagtgcctcaaaattgaagaaattgaaattctggtagcagaaaatcggtggccgattttcaaagcacgatagccgattttggactgt-tttttt 38270443  T
Q  227 gtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    | |  |||||||||||||||||| ||||||||||  ||||||| ||||||||||||||    
T  38270442 ggcctttggttcggcaaaaatcgatggccgatttagagcattcggtggccgattttga 38270385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 6132644 - 6132807
Alignment:
Q  122 aattcttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgt 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||| ||||||||| | |||||| ||||||||||  | | |    
T  6132644 aattgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggctgattttcagggtacggtgaccgattttgacatgttt 6132743  T
Q  222 tttttg-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    | ||||  || | |||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  6132744 tatttgagctttaggttcggcaaaaatcggtggccgatttggagcatttggtggccgattttga 6132807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 3937739 - 3937634
Alignment:
Q  152 aaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgttttttgtctgttggttcggcaaaaatcggt 251  Q
    |||||||||||||   ||||||||||||||||||||||||||| || ||||||||||||||| ||| |||||| || |  ||||||| ||||||||||||    
T  3937739 aaattggaattctgaaagcagaaaatcggtggccgattttcagggctcggtggccgattttgcactatgttttctggcctttggttcagcaaaaatcggt 3937640  T
Q  252 ggccga 257  Q
    ||||||    
T  3937639 ggccga 3937634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 47564500 - 47564564
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    |||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||    
T  47564500 ttgtgaaagtgcctcaaaattgaagaaattagaattctggaagcagaaaatcggtggccgatttt 47564564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 27498967 - 27499004
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattct 164  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27498967 ttgtgaaagtgcctcaaaattgaagaaattggaattct 27499004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 2891136 - 2891170
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaat 161  Q
    |||||||||||||||||||||||| ||||||||||    
T  2891136 ttgtgaaagtgcctcaaaattgaagaaattggaat 2891170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 27833191 - 27833059
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactct-gttttt 225  Q
    |||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||| |   |||||| ||||||| ||||| ||||||    
T  27833191 ttgtgaaagtgcctcaaaattgaagaaattagaattctggaagcagaaaatcggtggccgattttcagggtttggtggctgattttgcactctggttttt 27833092  T
Q  226 tgtctgttggttcggcaaaaatcggtggccgat 258  Q
    ||||||||||||||| |||||||||||||||||    
T  27833091 tgtctgttggttcggaaaaaatcggtggccgat 27833059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 39146522 - 39146389
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    ||||||||||| |||||||||||| ||||||||||| | | ||||||||| |||||| |||||||||| |  ||||||||||||||||    ||||||||    
T  39146522 ttgtgaaagtgactcaaaattgaagaaattggaattttggaagcagaaaaccggtggtcgattttcagggttcggtggccgattttgactgttgtttttt 39146423  T
Q  227 gtctgttggttcggcaaaaatcggtggccgattt 260  Q
    ||||||||||| |||||||| |||||||||||||    
T  39146422 gtctgttggtttggcaaaaaacggtggccgattt 39146389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 273
Target Start/End: Original strand, 21677798 - 21677945
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||||||||||||| |||||||||| || | ||| ||||||||||||||||||||||| |||| ||||| |||||| | || | || |||    
T  21677798 ttgtgaaagtgcctcaaaattgaagaaattggaatcctggaagctgaaaatcggtggccgattttcagggcacagtggctgattttaacctgttttattt 21677897  T
Q  227 g-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtg 273  Q
    |  ||   |||||||||||||||||||||| ||||| |||||||||||    
T  21677898 gagcttcaggttcggcaaaaatcggtggccaatttggagcattcagtg 21677945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 21679759 - 21679917
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    ||||||||||||||||||| | || ||||||||||||| | ||| ||| |||||||||||||||  || ||| ||||||||||||||| || | || |||    
T  21679759 ttgtgaaagtgcctcaaaaattaagaaattggaattctggaagctgaacatcggtggccgatttgtagggcatggtggccgattttgacctgttttattt 21679858  T
Q  227 g-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    |  ||   ||||||| |||||| ||||||||||||  ||||||||||||||||||||||    
T  21679859 gagcttcaggttcggaaaaaattggtggccgattttgagcattcagtggccgattttga 21679917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 24748348 - 24748435
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttga 214  Q
    ||||||||||| |||||||||||| ||||| ||||||| | ||| ||||||||||||| ||||||||| |||||||| ||||||||||    
T  24748348 ttgtgaaagtgactcaaaattgaaaaaattagaattctggaagctgaaaatcggtggctgattttcagggcacggtgaccgattttga 24748435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 44724383 - 44724446
Alignment:
Q  199 cggtggccgattttgaactctg-ttttttgtctgttggttcggcaaaaatcggtggccgatttg 261  Q
    |||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  44724383 cggtggccgattttcaactctggttttttgtctgttgattcgacaaaaatcggtggccgatttg 44724446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 44724332 - 44724398
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttca 193  Q
    ||||||| |||||||||||||||| |||||| |||||| | ||| ||||||||||||||||||||||    
T  44724332 ttgtgaacgtgcctcaaaattgaaaaaattgaaattctggaagctgaaaatcggtggccgattttca 44724398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 22829169 - 22829105
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    ||||||||||| |||||||||||| ||||||||||||| | || |||||||| ||||||||||||    
T  22829169 ttgtgaaagtgactcaaaattgaagaaattggaattctggaagtagaaaatcagtggccgatttt 22829105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 127 - 260
Target Start/End: Original strand, 3021841 - 3021974
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactct-gttttt 225  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||| ||||| ||||||||||||||| || |||||| |||||||| ||||| ||||||    
T  3021841 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcaggaaatccgtggccgattttcagggctcggtgg-cgattttgcactctggttttt 3021939  T
Q  226 tgtctgttggttcggcaaaaatcggtggccgattt 260  Q
    |||  ||||||||||||||||||||||||||||||    
T  3021940 tgttcgttggttcggcaaaaatcggtggccgattt 3021974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 15540038 - 15539898
Alignment:
Q  122 aattcttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctg- 220  Q
    |||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||  || ||||||||||||||| ||||||     
T  15540038 aattgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcgatggccgattttcaaggctcggtggccgattttgcactctga 15539939  T
Q  221 -ttttttgtctgttggttcggcaaaaatcggtggccgattt 260  Q
     ||||||||| |||||||||  |||||| ||||||| ||||    
T  15539938 tttttttgtcagttggttcgaaaaaaattggtggcccattt 15539898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 34980136 - 34979980
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaact-ctgttttt 225  Q
    |||||||| ||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| ||  |||||||||||||||||| || || | |||    
T  34980136 ttgtgaaaatgcctcaaaattgaagaaattagaattctagaagctgaaaatcggtggccgatttttaggacacggtggccgattttgacctgctttattt 34980037  T
Q  226 tgtctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgatttt 282  Q
       || | |||| |||||||||||| | || ||||| ||||||| ||||||||||||    
T  34980036 gagctttaggtttggcaaaaatcggggcccaatttggagcattcggtggccgatttt 34979980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 14836973 - 14837130
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||||||||||||||| ||||| ||||||| | ||| |||||| |||||||| ||||||| |||||||||||||||||||  | | || |||    
T  14836973 ttgtgaaagtgcctcaaaattgaagaaattagaattctggaagctgaaaattggtggccg-ttttcagggcacggtggccgattttgacatgttttattt 14837071  T
Q  227 g-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    |  ||   ||||||||||||||||| |||||||||| ||||||| | | ||||||||||    
T  14837072 gagcttcaggttcggcaaaaatcggcggccgatttggagcattcggagaccgattttga 14837130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 38019918 - 38019996
Alignment:
Q  184 ccgattttcagagcacggtggccgattttgaactctg--ttttttgtctgttggttcggcaaaaatcggtggccgattt 260  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| ||||||||| |||||||||||    
T  38019918 ccgattttcagagcacggtggccgattttcaactctgctttttttgtctgttggttcagcaaaaatcagtggccgattt 38019996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 11740025 - 11739962
Alignment:
Q  199 cggtggccgattttgaactctgtttttt--gtctgttggttcggcaaaaatcggtggccgattt 260  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  11740025 cggtggccgattttcaactctgttttttttgtctgttggttcggcaaaaatcggtggccgattt 11739962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 22163483 - 22163419
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    |||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||    
T  22163483 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggccgatttt 22163419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 11740076 - 11740010
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttca 193  Q
    |||||||||||||||||||||||| |||||||||||||   ||  ||||||||||||||||||||||    
T  11740076 ttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagttgaaaatcggtggccgattttca 11740010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 24126581 - 24126736
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||| |||||| |||||||| || ||   ||||||||||||||||||| || | || |||    
T  24126581 ttgtgaaagtgtctcaaaattgaagaaattggaattctagaagctgaaaattggtggccggttgtc---gcacggtggccgattttgacctgttttgttt 24126677  T
Q  227 g-tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
    |  ||   | |||||||||||||||||||||||||| || |||| ||||||||||||||    
T  24126678 gagcttcagattcggcaaaaatcggtggccgatttggagtattcggtggccgattttga 24126736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 284
Target Start/End: Complemental strand, 10474856 - 10474722
Alignment:
Q  152 aaattggaattctagtagcagaaaa-tcggtggccgattttcagagcacggtggccgattttgaactctgttttttgt-ctgttggttcggcaaaaatcg 249  Q
    ||||||||||||| | ||| ||||| | |||||||||||||||| ||||||||||||||||||| || | || ||||  ||   ||||||| ||||||||    
T  10474856 aaattggaattctggaagctgaaaaattggtggccgattttcagggcacggtggccgattttgacctgttttatttgagcttcaggttcggaaaaaatcg 10474757  T
Q  250 gtggccgatttgaagcattcagtggccgattttga 284  Q
    |||||||||||| ||||||| ||||||||||||||    
T  10474756 gtggccgatttggagcattcggtggccgattttga 10474722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 284
Target Start/End: Original strand, 2723698 - 2723847
Alignment:
Q  128 tgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgttttttg 227  Q
    ||||||||||||||||||||||| ||||||||||||| | ||| |||||||||        |||||| ||||||||||||||||||| || | || ||||    
T  2723698 tgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcgg--------tttcagggcacggtggccgattttgacctgttttatttg 2723789  T
Q  228 -tctgttggttcggcaaaaatcggtggccgatttgaagcattcagtggccgattttga 284  Q
      ||   |||||||||||||||||||||| ||||| ||||||  ||||||||||||||    
T  2723790 agcttcaggttcggcaaaaatcggtggccaatttggagcatttggtggccgattttga 2723847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 20042772 - 20042871
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgtttttt 226  Q
    |||||||||||  | ||||||||| ||||||||||||| | || ||||||| | |||||||||||||| ||||||||||||| |||| ||||||||||||    
T  20042772 ttgtgaaagtgatttaaaattgaagaaattggaattctggaagaagaaaattgatggccgattttcagggcacggtggccgaatttgcactctgtttttt 20042871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 20044759 - 20044817
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggcc 185  Q
    ||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||    
T  20044759 ttgtgaaagtgactcaaaattgaagaaattggaattctggaagcagaaaatcggtggcc 20044817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 695633 - 695697
Alignment:
Q  127 ttgtgaaagtgcctcaaaattgaataaattggaattctagtagcagaaaatcggtggccgatttt 191  Q
    |||||||||||||||||||||||| |||||| |||||| | ||| |||||| |||||||||||||    
T  695633 ttgtgaaagtgcctcaaaattgaagaaattgaaattctggaagctgaaaattggtggccgatttt 695697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 284
Target Start/End: Original strand, 17072619 - 17072763
Alignment:
Q  142 aaaattgaataaattggaattctagtagcagaaaatcggtggccgattttcagagcacggtggccgattttgaactctgttttttgt-ctgttggttcgg 240  Q
    |||||| || ||||||||||| |   ||| ||||||||||||||||||||||  | || |||||||||||||| || | || ||||  ||    ||||||    
T  17072619 aaaattaaagaaattggaattttgaaagctgaaaatcggtggccgattttcaaggtacagtggccgattttgacctgttttatttgagcttcaagttcgg 17072718  T
Q  241 caaaa-atcggtggccgatttgaagcattcagtggccgattttga 284  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||    
T  17072719 caaaaaatcggtggccgatttggagcattcggtggccgattttga 17072763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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