View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_33 (Length: 291)
Name: NF17343_low_33
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_33 |
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| [»] scaffold1113 (2 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 32684099 - 32684226
Alignment:
| Q |
13 |
atgaaggtgtgcggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgctgatttagcattcaaggcaag |
112 |
Q |
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| T |
32684099 |
atgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgctgatttagcattcaaggcaag |
32684198 |
T |
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| Q |
113 |
tttttctctaacaataattttgattcta |
140 |
Q |
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| T |
32684199 |
tttttctctaacaataattttgattcta |
32684226 |
T |
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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 32684284 - 32684358
Alignment:
| Q |
198 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaat |
272 |
Q |
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| T |
32684284 |
cctctaaaccagcagatctggcagctgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaat |
32684358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 32692182 - 32692256
Alignment:
| Q |
198 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaat |
272 |
Q |
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| T |
32692182 |
cctctaaaccagcagatctggcagctgaattgtgtgctgaaatgcaaggttgaatataaagaggaggttgacaat |
32692256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 32692090 - 32692124
Alignment:
| Q |
106 |
aggcaagtttttctctaacaataattttgattcta |
140 |
Q |
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| T |
32692090 |
aggcaagtttttctctaacaataattttgattcta |
32692124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 134 - 61
Alignment:
| Q |
67 |
gtagacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattcta |
140 |
Q |
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| T |
134 |
gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattcta |
61 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 1904 - 1872
Alignment:
| Q |
106 |
aggcaagtttttctctaacaataattttgattc |
138 |
Q |
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| T |
1904 |
aggcaagtttttctctaacaatgattttgattc |
1872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 1713 - 1745
Alignment:
| Q |
106 |
aggcaagtttttctctaacaataattttgattc |
138 |
Q |
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| T |
1713 |
aggcaagtttttctctaacaatgattttgattc |
1745 |
T |
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