View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_35 (Length: 283)
Name: NF17343_low_35
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_35 |
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| [»] scaffold0341 (4 HSPs) |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 70 - 283
Target Start/End: Original strand, 538 - 748
Alignment:
| Q |
70 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
169 |
Q |
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| T |
538 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
634 |
T |
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| Q |
170 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
269 |
Q |
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| T |
635 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
734 |
T |
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| Q |
270 |
aggtgtgcattgaa |
283 |
Q |
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| T |
735 |
aggtgtgcattgaa |
748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 70 - 283
Target Start/End: Original strand, 8191 - 8401
Alignment:
| Q |
70 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
169 |
Q |
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| T |
8191 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
8287 |
T |
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| Q |
170 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
269 |
Q |
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| T |
8288 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
8387 |
T |
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| Q |
270 |
aggtgtgcattgaa |
283 |
Q |
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| T |
8388 |
aggtgtgcattgaa |
8401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 500 - 554
Alignment:
| Q |
5 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
59 |
Q |
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| T |
500 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 8153 - 8207
Alignment:
| Q |
5 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
59 |
Q |
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| T |
8153 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
8207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 70 - 283
Target Start/End: Original strand, 6506513 - 6506723
Alignment:
| Q |
70 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
169 |
Q |
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| T |
6506513 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
6506609 |
T |
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| Q |
170 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
269 |
Q |
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| T |
6506610 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
6506709 |
T |
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| Q |
270 |
aggtgtgcattgaa |
283 |
Q |
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| T |
6506710 |
aggtgtgcattgaa |
6506723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 283
Target Start/End: Complemental strand, 6522161 - 6522006
Alignment:
| Q |
122 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgtcacaacaatttgggatttc |
221 |
Q |
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| T |
6522161 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acc-----tattgttacaacaatttgaaatttc |
6522068 |
T |
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| Q |
222 |
tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaa |
283 |
Q |
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| T |
6522067 |
tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaa |
6522006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 283
Target Start/End: Original strand, 6512451 - 6512630
Alignment:
| Q |
98 |
atgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattct |
197 |
Q |
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| T |
6512451 |
atgatgagggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagc------acccaacct |
6512544 |
T |
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| Q |
198 |
attgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaa |
283 |
Q |
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| T |
6512545 |
gttgttacaacatcttgggattgctttgatagattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaa |
6512630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 282
Target Start/End: Original strand, 6516855 - 6517028
Alignment:
| Q |
103 |
gaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgt |
202 |
Q |
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| T |
6516855 |
gaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagc------actcatcctgttgt |
6516948 |
T |
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| Q |
203 |
cacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattga |
282 |
Q |
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|||||| ||| |||||| |||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
6516949 |
tacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattga |
6517028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 6506475 - 6506529
Alignment:
| Q |
5 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
59 |
Q |
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| T |
6506475 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
6506529 |
T |
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