View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_37 (Length: 259)
Name: NF17343_low_37
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 1415530 - 1415314
Alignment:
| Q |
19 |
aagggacaaaaagataaattaacatgactgtcaggtcactccctttgacattccattttttgcgtgtcaaaactttgagtttgtagaaaagtatatctta |
118 |
Q |
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| T |
1415530 |
aagggacaaaaagataaattagcatgactgtcaggtcactccctt-gacattccattctttgcgtgtcaaaactttgcgtttgtagaaaagtatatctta |
1415432 |
T |
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| Q |
119 |
aaaagataaatgaatatgggtcgcatttatttgtcaaattagtacttagtattgtcaagaaggaaaaatcagatatgattaacaaagaattggttgagaa |
218 |
Q |
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| T |
1415431 |
aaaagataaatgaatacgggtcacatttatttgtcaaattagtatttagtattgtcaagaaggaaaaatcagatatgattaacaaagaattggttgagaa |
1415332 |
T |
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| Q |
219 |
aatagggcaaatatatgt |
236 |
Q |
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| T |
1415331 |
aatagggcaaatatatgt |
1415314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 1421884 - 1421681
Alignment:
| Q |
27 |
aaaagataaattaacatgactgtcaggtcactccctttgacattccattttttgcgtgtcaaaactttgagtttgt-agaaaagtatatcttaaaaagat |
125 |
Q |
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||||||||||||| ||||||||| ||||| |||| |||||||| || ||| ||||| |||||||| ||||||| ||||||||||||||||||||||| |
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| T |
1421884 |
aaaagataaattagtctgactgtcacgtcacatcctt-gacattcccttctttacgtgtgaaaactttcagtttgttagaaaagtatatcttaaaaagat |
1421786 |
T |
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| Q |
126 |
aaatgaatatgggtcgcatttatttgtcaaattagtacttagtattgtcaagaaggaaaaatcagatatgattaacaaagaattggttgagaaaataggg |
225 |
Q |
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| T |
1421785 |
a--tgaatatgggtcgcaattatttgacatattagtgcttagtattgtcaagaaggaaaaatcagatattattaacaaagaattggttaagaagataggg |
1421688 |
T |
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| Q |
226 |
caaatat |
232 |
Q |
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| T |
1421687 |
caaatat |
1421681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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