View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17343_low_40 (Length: 251)

Name: NF17343_low_40
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17343_low_40
NF17343_low_40
[»] chr5 (11 HSPs)
chr5 (1-237)||(39486268-39486502)
chr5 (1-98)||(39458420-39458517)
chr5 (1-98)||(39480319-39480416)
chr5 (1-95)||(39450949-39451043)
chr5 (1-91)||(39454592-39454682)
chr5 (1-140)||(39460150-39460293)
chr5 (1-91)||(39464660-39464750)
chr5 (1-92)||(43312639-43312730)
chr5 (1-98)||(39475452-39475549)
chr5 (1-97)||(39471983-39472079)
chr5 (4-97)||(39470886-39470979)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39486502 - 39486268
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttggatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39486502 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttggatgg 39486403  T
Q  101 atatacacttactctgtgagtgactgttttttgaattgtttgatattcctgagnnnnnnnnnnnnnnatatatgactaggaatagtgtagagaattatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||    
T  39486402 atatacacttactctgtgagtgactgttttttgaattgtttgatattcctgag--ttttttttttatatatatgactaggaatagtgtagagaattatta 39486305  T
Q  201 gtatgattattgaaggggtgtttgagttgaagtatgt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  39486304 gtatgattattgaaggggtgtttgagttgaagtatgt 39486268  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 39458420 - 39458517
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttggat 98  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  39458420 cacggttgattagaagctttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttctgctttcttcatcctggat 39458517  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 39480416 - 39480319
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttggat 98  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39480416 cacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcctggat 39480319  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 39451043 - 39450949
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttg 95  Q
    |||| |||||||||||||| || ||||||||||||||||||||||| |  ||||||||  ||||||||| |||||||||||||||||||||||||    
T  39451043 cacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttcatcttg 39450949  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 39454682 - 39454592
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcat 91  Q
    |||||||||||||||| || || || |||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  39454682 cacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacaccacttctgctttcttcat 39454592  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 39460293 - 39460150
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttggat-- 98  Q
    |||||||| ||||||||||||| || |||||||||||| ||||||| |    ||| ||  ||||||||| ||| |||||||||||||||||||||||       
T  39460293 cacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaacttctgctttcttcatcttggagca 39460194  T
Q  99 --ggatatacacttactctgtgagtgactgttttttgaattgtt 140  Q
      |||||||| |||||||||| ||| ||||||||||||||||||    
T  39460193 caggatatacccttactctgtaagttactgttttttgaattgtt 39460150  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 39464660 - 39464750
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcat 91  Q
    ||||||||||||||||||| ||||| |||||||  |||||||||||||| ||| | ||  ||||||||| ||| |||||||||||||||||    
T  39464660 cacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctgctttcttcat 39464750  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 43312639 - 43312730
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatc 92  Q
    |||||||||| |||||||| ||||| ||||||||||| |||| ||| || ||||| || |||||||||| ||||||||||  ||||||||||    
T  43312639 cacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttctagtttcttcatc 43312730  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 39475549 - 39475452
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttggat 98  Q
    |||| ||||||||||||||  |||| ||||| ||||||| |||||| |  | ||| ||  ||||||||| ||||||||||||||||||||||||||||    
T  39475549 cacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttggat 39475452  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 39472079 - 39471983
Alignment:
Q  1 cacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttgga 97  Q
    ||||||||||||||||||| ||||| || || |  ||||||| ||||||  || | ||  |||||| || |||||||||||||||||||||||||||    
T  39472079 cacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttgga 39471983  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 39470886 - 39470979
Alignment:
Q  4 ggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttgga 97  Q
    |||||||||||||||| || || || | ||  |||||||||||||| ||| | ||  ||||||||| |||||||||  |||||||||| |||||    
T  39470886 ggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactttcttcatgttgga 39470979  T

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