View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_44 (Length: 244)
Name: NF17343_low_44
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 41201422 - 41201640
Alignment:
| Q |
9 |
gattattcttgtttgttgcttacttcacaacattgtcattgatatgcaagatgaagtgaaggatgaattgctctatttgtatcataataatcatgactct |
108 |
Q |
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| T |
41201422 |
gattattcttgtttgttgcttacttcacaacattgtcattgatatgcaagatgaagtgaaggatgaattgctctatttgtatcataataatcatgactct |
41201521 |
T |
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| Q |
109 |
gggtaccatcaacttatttgtgaaggtgttgatgagatgggagtggcactaagagaaagtttgtctcactacttgaatggaaggttgtatccatgannnn |
208 |
Q |
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| T |
41201522 |
gggtaccatcaacttatttgtgaaggtgttgatgagatgggagtggcactaagagaaagtttgtctcactacttgaatggaaggttgtatccatgatttt |
41201621 |
T |
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| Q |
209 |
nnnaacttagccaacaagt |
227 |
Q |
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|||||||||||||||| |
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| T |
41201622 |
tttaacttagccaacaagt |
41201640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 41211471 - 41211657
Alignment:
| Q |
9 |
gattattcttgtttgttgcttacttcacaacattgtcattgatatgcaagatgaagtgaaggatgaattgctctatttgtatcataataatcatgactct |
108 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||| || || | ||| |||| ||||||||||||||| |
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| T |
41211471 |
gattattcttgtttgttgcatacttcacaacattgttattgacatgcaagatgaagtgaatgatgagttactatgtttctatcgtaataatcatgactca |
41211570 |
T |
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| Q |
109 |
gggtaccatcaacttatttgtgaaggtgttgatgagatgggagtggcactaagagaaagtttgtctcactacttgaatggaaggttg |
195 |
Q |
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| T |
41211571 |
ggttaccatcaacttgtttatgaaggttttgatgagaagggagtggcactaagagaaagtttgtctcactacttgactggaaggttg |
41211657 |
T |
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