View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_45 (Length: 242)
Name: NF17343_low_45
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1518128 - 1517906
Alignment:
| Q |
1 |
cttaatgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaa |
100 |
Q |
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| T |
1518128 |
cttaatgatccttggtcagaaaaacatcaaataaatactggattttactttgcgaggtcgaataacaagaccatatctttgtttgaaatatggaatggaa |
1518029 |
T |
|
| Q |
101 |
tgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1518028 |
tgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactaaatgttaggttcttgga |
1517929 |
T |
|
| Q |
201 |
tactctctattttagtggatttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1517928 |
tactctctattttagtggatttt |
1517906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 1512920 - 1512703
Alignment:
| Q |
6 |
tgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaatgaaa |
105 |
Q |
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|||||||||||||||||||||| || ||||||||||||| ||| | |||||| ||||| ||||||||||| |||||||||| ||||||||||| |||| |
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| T |
1512920 |
tgatccttggtcagaaaaacatttgatcaatactggatttttctttgtgaggtcaaataaaaagaccatatccttgtttgaaacatggtatggaaagaaa |
1512821 |
T |
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| Q |
106 |
gataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttggatactc |
205 |
Q |
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| T |
1512820 |
gacaattccacaggtaaaaaggagcaagatgtgcttattgacctcattgaagctggtatatttggacatttagggctcaaggttagattcttggataccc |
1512721 |
T |
|
| Q |
206 |
tctattttagtggatttt |
223 |
Q |
| |
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| |||||||||||||||| |
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| T |
1512720 |
tttattttagtggatttt |
1512703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 1522486 - 1522269
Alignment:
| Q |
6 |
tgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaatgaaa |
105 |
Q |
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||||||||||||||||||| ||| | | ||||||||||||| ||| | ||| || || ||||||||||||||||||||||| | |||||||||||||||| |
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| T |
1522486 |
tgatccttggtcagaaaaaaatcgagtcaatactggatttttctttgtgagatcaaacaacaagaccatatctttgtttgagacatggtatggaatgaaa |
1522387 |
T |
|
| Q |
106 |
gataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttggatactc |
205 |
Q |
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||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||| || || |||||||| |||| | |||||||||||||| | |
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| T |
1522386 |
gataatttcacagaaaaaaaggagcaagatgtgcttgaggacctcattaaaggtggtatatttcgagatttgggaatcaaggcaaggttcttggataccc |
1522287 |
T |
|
| Q |
206 |
tctattttagtggatttt |
223 |
Q |
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|||||||||||||||||| |
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| T |
1522286 |
tctattttagtggatttt |
1522269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 16643795 - 16643577
Alignment:
| Q |
5 |
atgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaatgaa |
104 |
Q |
| |
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|||||||||||||||||||||| ||| ||||| ||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
16643795 |
atgatccttggtcagaaaaacacagaatcaataccggattttactttgtaaggtccaataacaagaccatatctttgtttgaaacatggtatggaaagaa |
16643696 |
T |
|
| Q |
105 |
agataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttggatact |
204 |
Q |
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||| ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
16643695 |
agacaattccacaggaaaaaaagagcaagatgttcttcttgacctcattagacatggtataattggacacttgggactcaaggttaggttcttggatact |
16643596 |
T |
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| Q |
205 |
ctctattttagtggatttt |
223 |
Q |
| |
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|||||||||||||| |||| |
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| T |
16643595 |
ctctattttagtggttttt |
16643577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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