View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_47 (Length: 239)
Name: NF17343_low_47
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 4488777 - 4488563
Alignment:
| Q |
10 |
gtagataattctcttttgattaggtcttagacgaatttattttaagttgtttgaatcatataattactgaacacttttctacgcaataacaaatctagta |
109 |
Q |
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| T |
4488777 |
gtagctaattctcttttgattaggtcttagacgaatttattttaagttgtttgaatcatataattactgaacacttttctacgcaataacaaacctagta |
4488678 |
T |
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| Q |
110 |
ttattcagttatatttgttcttcatgcnnnnnnnatattgatgaatatatgaattgatctaaagtcttaagtgattactaacataacttttaaactcggt |
209 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
4488677 |
ttattcagttatatttgttcttcatgctttttttatattgatgaatatatgaattgatctaaagtcttaagtgttcactaacataacttttaaactcggt |
4488578 |
T |
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| Q |
210 |
cttatatgattgttg |
224 |
Q |
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||||||||||||||| |
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| T |
4488577 |
cttatatgattgttg |
4488563 |
T |
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