View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_5 (Length: 524)
Name: NF17343_low_5
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 14576243 - 14576744
Alignment:
| Q |
1 |
ggtggaatgggaagttttggtcgcaacagacaatacatggcccccaaaaagaattcctgacaagaatgtctcaaatatatcaaagtaagataatttgtgt |
100 |
Q |
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| T |
14576243 |
ggtggaatgggaagttttggtcgcaacagacaatacatggcccccaaaaagaattcctgacaagaatgtctcaaatatatcaaagtaagataatttgtgt |
14576342 |
T |
|
| Q |
101 |
ttagctttgtcttgctttgtatattgtaaagtagatatttatgaatttaaaattgttggcggaactcttgattacaacattaatgcacttgagcaatagg |
200 |
Q |
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| T |
14576343 |
ttagctttgtcttgctttgtatattgtaaagtagatatttatgaatttaaagttgttggcggaactcttgattacaacattaatgcacttgagcaatagg |
14576442 |
T |
|
| Q |
201 |
tatgatagtggtaaaaaatttgctgagttttatgtggaaactcctgagtcctgatgtagatggccttgacaataggtatgatagtgatgttgaagaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14576443 |
tatgatagtggtaaaaaatttgctgagttttatgtggaaactcctgagtcctgatgtagatggccttgacaataggtatgatagtgatgttgaagaagaa |
14576542 |
T |
|
| Q |
301 |
gtggaagggaaatgttgtgctgaagttgatgattgtccttaatgatagtgtgtatgatgaagattcataatggacatctctcttgccagaccagactttg |
400 |
Q |
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| T |
14576543 |
gtggaagggaaaggttgtgctgaagttgatgattgtccttaatgatagtgtgtatgatgaagattcataatggacatctctcttgccagaccagactttg |
14576642 |
T |
|
| Q |
401 |
aattcaactcttgctataccaatttaagaaggttagattgatttggaaggtgttgaatcatcaaggaaccttgttgcaacaattgtgtcgtattttgaag |
500 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14576643 |
aattcaactcttgctctaccaatttaagaaggttagattgatttggaaggtgttgaatcatcaaggaaccttgttgcaacaattgtgtcttattttgaag |
14576742 |
T |
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| Q |
501 |
at |
502 |
Q |
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| T |
14576743 |
at |
14576744 |
T |
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