View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_50 (Length: 236)
Name: NF17343_low_50
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35455453 - 35455674
Alignment:
| Q |
1 |
tatcatgtttccactggttgtttgtgtacaaagaccggtcactgatcgagtacaacgtaattgaggcctaatcatatgcagttcaaccttacaagcaaca |
100 |
Q |
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| T |
35455453 |
tatcatgtttccactggttgtttgtgtacaaagaccggtcactgatcgagtacaacgtaattgaggcctaatcatatgcagttcaaccttacaagcaaca |
35455552 |
T |
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| Q |
101 |
aaatcttatattataactttaaggtcaactttacggcaagaaactgtaacaccgaaacaaataaatataaatgttggagtataataatcagttctatatt |
200 |
Q |
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| T |
35455553 |
aaatcttatattataactttaaggtcaactttacggcaagaaactgtaacaccgaaacaaataaatataaatgttggagtataataatcagttctatatt |
35455652 |
T |
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| Q |
201 |
tatttgtttcactgttggagtt |
222 |
Q |
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| T |
35455653 |
tatttgtttcactgttggagtt |
35455674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 35455770 - 35455647
Alignment:
| Q |
44 |
gatcgagtacaacgtaattgaggcct-aatcatatgcagttcaaccttacaagcaacaaaatcttatattataactttaaggtcaactttacggcaagaa |
142 |
Q |
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| T |
35455770 |
gatcaagtacaacatgattgaggcctcaatcat--gcaattcaacctcacaagcgacaacatcttatattataa-tttaaggtcaaatttacagcaagta |
35455674 |
T |
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| Q |
143 |
actgtaacaccgaaacaaataaatata |
169 |
Q |
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| T |
35455673 |
actccaacagtgaaacaaataaatata |
35455647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 21259875 - 21259806
Alignment:
| Q |
76 |
atgcagttcaaccttacaagcaacaaaatcttatattataactttaaggtcaactttacggcaagaaact |
145 |
Q |
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| T |
21259875 |
atgcaattcaacctcacaaacaacaacaccctatattacaactttaaggtcaacattacatcaagaaact |
21259806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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