View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17343_low_52 (Length: 234)
Name: NF17343_low_52
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_52 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 13630548 - 13630425
Alignment:
| Q |
92 |
taatatatatagatggaaagagataggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
191 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13630548 |
taatatatatagatggaaagagacaggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
13630449 |
T |
|
| Q |
192 |
accacagattctttttgagtctta |
215 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
13630448 |
accacagattctttttgagcctta |
13630425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 13730960 - 13730837
Alignment:
| Q |
92 |
taatatatatagatggaaagagataggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
191 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13730960 |
taatatatatagatggaaagagacaggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
13730861 |
T |
|
| Q |
192 |
accacagattctttttgagtctta |
215 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
13730860 |
accacagattctttttgagcctta |
13730837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University