View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_53 (Length: 231)
Name: NF17343_low_53
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 32876649 - 32876428
Alignment:
| Q |
3 |
tgtgtccctctgactctaagtggtgctattaacatcgatgtcgggagctgacgctaaattgaagtctagaatcatgttttcttatagtgaatgttattta |
102 |
Q |
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| T |
32876649 |
tgtgtccctatgactctaagtggtgctattaacatcggtgtcgggagctgacgctaaattgaagtctagaatcatgttttcttacggtgaatgttattta |
32876550 |
T |
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| Q |
103 |
nnnnnnngcgagaaataaagtatataaatgatgggaaattgatttcacttactcnnnnnnnatagtttgtttccaacatagaaaacatgacgaatgacaa |
202 |
Q |
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| T |
32876549 |
tttttttgcgagaaataaagtatataaaggatgggaaattgatttcacttactctttttttatagtttgtttccaacatagaaaacatgacgaatgacaa |
32876450 |
T |
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| Q |
203 |
actaatgtcattgaagtattat |
224 |
Q |
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||||||||| |||||||||||| |
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| T |
32876449 |
actaatgtcgttgaagtattat |
32876428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 32882925 - 32882701
Alignment:
| Q |
2 |
gtgtgtccctctgactctaagtggtgctattaacatcgatgtcgggagctgacgctaaa-ttgaagtctagaatcatgttttcttatagtgaatgttatt |
100 |
Q |
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||||||||||| ||||||||||||| |||||| | | ||||||| ||||||||||| ||| |||||| ||| |||||||||| |||| ||||||||| |
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| T |
32882925 |
gtgtgtccctccgactctaagtggtactattagtgttggtgtcggggactgacgctaaaattggagtctaaaattatgttttcttgtagtaaatgttatt |
32882826 |
T |
|
| Q |
101 |
tannnnnnngcgagaaataaagtatata--aatgatgggaaattgatttcacttactcnnnnnnnatagtttgtttccaacatagaaaacatgacgaatg |
198 |
Q |
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| T |
32882825 |
tattttttggcgagaaataaagtatatataaaggatgggaacttgatatcacttactctttttg-atagtttgtttccaacatagaaaacatgacaaatg |
32882727 |
T |
|
| Q |
199 |
acaaactaatgtcattgaagtattat |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32882726 |
acaaactaatgtcattgaagtattat |
32882701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 32887108 - 32886883
Alignment:
| Q |
2 |
gtgtgtccctctgactctaagtggtgctattaacatcgatgtcgggagctgacgctaa-attgaagtctagaatcatgttttcttatagtgaatgttatt |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||| | || ||||||| || ||||||| |||||| |||| |||||||||||||| |||| ||||||||| |
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| T |
32887108 |
gtgtgtccctccaactctaagtggtgctattagcgtccgtgtcgggggccaacgctaatattgaattctaaaatcatgttttcttgtagtaaatgttatt |
32887009 |
T |
|
| Q |
101 |
tannnnnnngcgagaaataaagtata---taaatgatgggaaattgatttcacttactcnnnnnnnatagtttgtttccaacatagaaaacatgacgaat |
197 |
Q |
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|| ||||||||||||||||| |||| ||| |||| |||||| ||||||||| |||||| ||||||||||||||||||||||| ||| |
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| T |
32887008 |
tattttttggcgagaaataaagtatagtataaaggatcggaacttgatt-cacttactctttttttatagttcgtttccaacatagaaaacatgacaaat |
32886910 |
T |
|
| Q |
198 |
gacaaactaatgtcattgaagtattat |
224 |
Q |
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||||||||||||||||||||||||||| |
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| T |
32886909 |
gacaaactaatgtcattgaagtattat |
32886883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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