View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_55 (Length: 228)
Name: NF17343_low_55
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 47417613 - 47417700
Alignment:
| Q |
4 |
tttggcacaaatggaaatacgacggatattactaattcaagttcaagcgcaaagataacgacttggagtgtacaaggaccccaattgg |
91 |
Q |
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| T |
47417613 |
tttggcacaaatggaaataccacggacattactaattcaagttcaagcgcaaagataacgacttggagtgtacaaggaccccaattgg |
47417700 |
T |
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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 47417764 - 47417820
Alignment:
| Q |
155 |
gtaggaactagagccctactctaagtctggttcttggactcataaccaatatctgtg |
211 |
Q |
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| T |
47417764 |
gtaggaactagagccctactctaagtctggttcttggactcacaaccaatatctgtg |
47417820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 47406930 - 47406975
Alignment:
| Q |
3 |
ttttggcacaaatggaaatacgacggatattactaattcaagttca |
48 |
Q |
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| T |
47406930 |
ttttggcacaaatggaaatatgactgatattactaactcaagttca |
47406975 |
T |
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