View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_56 (Length: 226)
Name: NF17343_low_56
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 46344595 - 46344753
Alignment:
| Q |
52 |
ataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattc |
151 |
Q |
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| T |
46344595 |
ataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattc |
46344694 |
T |
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| Q |
152 |
caccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgct |
210 |
Q |
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| T |
46344695 |
caccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgct |
46344753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 52 - 210
Target Start/End: Complemental strand, 46451961 - 46451803
Alignment:
| Q |
52 |
ataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattc |
151 |
Q |
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| T |
46451961 |
ataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattc |
46451862 |
T |
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| Q |
152 |
caccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgct |
210 |
Q |
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| T |
46451861 |
caccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgct |
46451803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 52 - 210
Target Start/End: Complemental strand, 46462929 - 46462771
Alignment:
| Q |
52 |
ataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattc |
151 |
Q |
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| T |
46462929 |
ataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattc |
46462830 |
T |
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| Q |
152 |
caccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgct |
210 |
Q |
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| T |
46462829 |
caccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgct |
46462771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 46466346 - 46466194
Alignment:
| Q |
57 |
accttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccacca |
156 |
Q |
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| T |
46466346 |
accttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccacca |
46466247 |
T |
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| Q |
157 |
ccagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgc |
209 |
Q |
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| T |
46466246 |
ccagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgc |
46466194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 46471551 - 46471399
Alignment:
| Q |
57 |
accttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccacca |
156 |
Q |
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|||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||||||||| |
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| T |
46471551 |
accttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccacca |
46471452 |
T |
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| Q |
157 |
ccagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgc |
209 |
Q |
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| T |
46471451 |
ccagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgc |
46471399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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