View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17343_low_58 (Length: 221)

Name: NF17343_low_58
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17343_low_58
NF17343_low_58
[»] chr5 (10 HSPs)
chr5 (19-206)||(39486549-39486736)
chr5 (19-190)||(39475606-39475780)
chr5 (19-189)||(39483361-39483531)
chr5 (26-190)||(39470662-39470826)
chr5 (37-191)||(39472135-39472289)
chr5 (38-191)||(39464451-39464604)
chr5 (23-190)||(39451100-39451270)
chr5 (32-147)||(39454782-39454897)
chr5 (31-183)||(39460357-39460509)
chr5 (34-190)||(39458207-39458363)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 39486736 - 39486549
Alignment:
Q  19 gttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39486736 gttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgg 39486637  T
Q  119 gggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcgacatcgtcatctgtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39486636 gggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcgacatcgtcatctgtg 39486549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 39475780 - 39475606
Alignment:
Q  19 gttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgaca---aaacgtggttcggtgtt 115  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||  |||||  |   |||| ||| ||||||||    
T  39475780 gttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtt 39475681  T
Q  116 tgggggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatc 190  Q
    |||||||||||||  |||||||||||||||||  | |||||| || || || ||||||||||| |||| ||||||    
T  39475680 tgggggaagagaaacttctggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatc 39475606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 39483531 - 39483361
Alignment:
Q  19 gttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgg 118  Q
    |||||||||||||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||||||| ||| || ||  | | |||  ||||||    
T  39483531 gttgtccttctctagtagtgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagcgttgatggcagaaactagatcgaagtttgg 39483432  T
Q  119 gggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacat 189  Q
    ||||||| ||||||||||||||||||| || |  ||| ||||  | |||||||||||||| | ||||||||    
T  39483431 gggaagataacattctggaaggttgattacattaagaaaatcaaagatgggaagggatttagggtagacat 39483361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 39470662 - 39470826
Alignment:
Q  26 ttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaaga 125  Q
    ||||| ||||||||||||||| | ||||||||||||||||| ||| |||||||| ||||||||||||||  |  ||| ||| || | | ||||| ||| |    
T  39470662 ttctccagtagtgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggatcagaggttgggagaaca 39470761  T
Q  126 gaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatc 190  Q
    |||  |||||||||||||||||| ||||||||||| || ||||||| |||||| | |||||||||    
T  39470762 gaaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatc 39470826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 39472289 - 39472135
Alignment:
Q  37 tgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattctgg 136  Q
    ||||||| |||||  |||||||||||||||||||||||||||| ||||| ||  ||||      || | | || |||||||||| |||||||||||||||    
T  39472289 tgaggttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagagggaccttgatctgtgtttggggcaagagaacattctgg 39472190  T
Q  137 aaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcg 191  Q
    |||||||||||  ||||| |||||||| || ||||||||||| ||||||||||||    
T  39472189 aaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcg 39472135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 191
Target Start/End: Original strand, 39464451 - 39464604
Alignment:
Q  38 gaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattctgga 137  Q
    |||||| || || |||||||||||||||||||| ||||| |||||||||||||||||  |  ||| ||| || | | || |||||||||||  |||||||    
T  39464451 gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcatagcggaacctggatcagaggtttggggaagagaaacttctgga 39464550  T
Q  138 aggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcg 191  Q
    ||||||||||| |  |||||||| || ||||||| |||||| ||||||||||||    
T  39464551 aggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcg 39464604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 39451270 - 39451100
Alignment:
Q  23 tccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatg---acaaaacgtggttcggtgtttggg 119  Q
    |||| ||| |||||||||||| || || ||||||||||| ||||||||||||||||| ||||||||   ||||    | |||| ||| | |||||||||     
T  39451270 tcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttgga 39451171  T
Q  120 ggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatc 190  Q
    |||||||||  |||||||||||||||||  | ||||||||| || || ||||||||||| |||| ||||||    
T  39451170 ggaagagaaacttctggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatc 39451100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 39454897 - 39454782
Alignment:
Q  32 agtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcat-gacaaaacgtggttcggtgtttgggggaagagaaca 130  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||  ||| ||  |||| ||| |  ||||||||||||||||| ||    
T  39454897 agtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaac-tggattagtgtttgggggaagagagca 39454799  T
Q  131 ttctggaaggttgatga 147  Q
    |||||||||||||||||    
T  39454798 ttctggaaggttgatga 39454782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 39460509 - 39460357
Alignment:
Q  31 tagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaaca 130  Q
    |||||||||| || ||||| |||||||||||||||| |||||||||||| |||| |||  ||||     ||  ||||||| |||||||||||||||||      
T  39460509 tagtagtgagattagatacggcttgtttgacgtttgatttctgagcttcgaggaaagccatcattctggaagttggttcgatgtttgggggaagagaaac 39460410  T
Q  131 ttctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgt 183  Q
    |||||||||||||||||  | ||||||||| ||| ||||||| ||||| ||||    
T  39460409 ttctggaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgt 39460357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 39458207 - 39458363
Alignment:
Q  34 tagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattc 133  Q
    ||||||||||||| || |||| |||||||||||||||||||||||  |||||| |   |||| |  ||  |   | || |||||||||||||||||||||    
T  39458207 tagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacattc 39458306  T
Q  134 tggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatc 190  Q
    |||||||| ||  |  |  |||||||||   |||| ||||||||| |||||||||||    
T  39458307 tggaaggtcgacaatgttaagagaatcgtcgatggcaagggatttagtgtagacatc 39458363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University