View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17343_low_6 (Length: 520)
Name: NF17343_low_6
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_6 |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 10 - 504
Target Start/End: Complemental strand, 17532963 - 17532469
Alignment:
| Q |
10 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17532963 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
17532864 |
T |
|
| Q |
110 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatg |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17532863 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatg |
17532764 |
T |
|
| Q |
210 |
ctagtaactatagaagtatggctggtaatatattttatctcactaatacaagacctgatatcatgtttgctgcaagtttactttctcggttcatgaatga |
309 |
Q |
| |
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||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17532763 |
ctagtaactatagaagtttggttggtaatctattttatctcactaatacaagacctgatatcatgtttgctgcaagtttactttctcggttcatgaatga |
17532664 |
T |
|
| Q |
310 |
tccaagccatatccatctaggagccgcaaaaagggtgttgagatatattcaaggcactttggaccatggaatcaaatatgacagcaaggttgaaagtaag |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
17532663 |
tccaagccatatccatctaggagccgcaaaaagggtgttgagatatattcaaggcactttggactatggaatcaaatatgacagcaaggttgaaagtaag |
17532564 |
T |
|
| Q |
410 |
ttaattggcttttgcgatagtgactgggcaggttgtatggatgacatgaaaagcacctctggatatgttttctcattaggttcaggagcagtttc |
504 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17532563 |
ttaattggcttttgcgataatgactgggcaggttgtatggatgacatgaaaagcacctctggatatgttttctcattaggttcaggagcagtttc |
17532469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 26410143 - 26410330
Alignment:
| Q |
10 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
109 |
Q |
| |
|
|||||||| |||||| ||| | || |||||||||||||| ||||| |||||||||| || ||||||| || ||||||||||||| ||||||||| || |
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| T |
26410143 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtttaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
26410242 |
T |
|
| Q |
110 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
197 |
Q |
| |
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|| ||||| |||||||| ||| |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
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|
| T |
26410243 |
atcttgaaaaagtttggcatgaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
26410330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 10 - 504
Target Start/End: Complemental strand, 35446 - 34953
Alignment:
| Q |
10 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
35446 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagttttcatttgtcaaaagaaatatgctgagaaa |
35347 |
T |
|
| Q |
110 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatg |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35346 |
atattgaagaattttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatg |
35247 |
T |
|
| Q |
210 |
ctagtaactatagaagtatggctggtaatatattttatctcactaatacaagacctgatatcatgtttgctgcaagtttactttctcggttcatgaatga |
309 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35246 |
ctagtaactatagaagtttggttggtaatctattttatctcactaatacaagacctgatatcatgtttgctgcaagtttacttt-acggttcatgaatga |
35148 |
T |
|
| Q |
310 |
tccaagccatatccatctaggagccgcaaaaagggtgttgagatatattcaaggcactttggaccatggaatcaaatatgacagcaaggttgaaagtaag |
409 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
35147 |
tccaagccatatccatctaggagctgcaaaaagggtgttgagatatattcaaggcactttggactatggaatcaaatatgacagcaaggttgaaagtaag |
35048 |
T |
|
| Q |
410 |
ttaattggcttttgcgatagtgactgggcaggttgtatggatgacatgaaaagcacctctggatatgttttctcattaggttcaggagcagtttc |
504 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35047 |
ttaattggcttttgcgacagtgactgggcaggttgtatggatgacatgaaaagcaactctggatatgttttctcattaggttcaggagcagtttc |
34953 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 159 - 350
Target Start/End: Complemental strand, 14622 - 14432
Alignment:
| Q |
159 |
tagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatgctagtaactatagaagtatggctggtaatatattttatctcactaatac |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||| || ||||| |||||||||| |||| || ||||||| ||||||| ||||||| ||| |
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| T |
14622 |
tagttgtgaatgaaaa-ttgaagaaagaagttggaggaaagaacgttgatgccagtaactataaaagtccggttggtaatctattttacctcactagtac |
14524 |
T |
|
| Q |
259 |
aagacctgatatcatgtttgctgcaagtttactttctcggttcatgaatgatccaagccatatccatctaggagccgcaaaaagggtgttga |
350 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14523 |
aagaccggatatcatgtttgcagcaagtttactttctcggttcatgaatgatccaagccatatccatctaggagcaacaaaaagggtgttga |
14432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 26898483 - 26898296
Alignment:
| Q |
10 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
109 |
Q |
| |
|
|||||||| |||||| ||| | || |||||||||||||| ||||| |||||||||| || ||||||| || ||||||||||||| ||||||||| || |
|
|
| T |
26898483 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtttaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
26898384 |
T |
|
| Q |
110 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
197 |
Q |
| |
|
|| ||||| |||||||| ||| |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
|
|
| T |
26898383 |
atcttgaaaaagtttggcatgaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
26898296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 24050533 - 24050720
Alignment:
| Q |
10 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
109 |
Q |
| |
|
|||||||| |||||| ||| | || |||||||||||||| ||||| |||||||||| || ||||||| || ||||||||||||| ||||||||| || |
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|
| T |
24050533 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtttaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
24050632 |
T |
|
| Q |
110 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
197 |
Q |
| |
|
|| ||||| |||||||| ||| |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
|
|
| T |
24050633 |
atcttgaaaaagtttggcatgaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
24050720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 23678257 - 23678444
Alignment:
| Q |
10 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
109 |
Q |
| |
|
|||||||| |||||| ||| | || |||||||||||||| ||||| | |||||||| || ||||||| || ||||||||||||| ||||||||| || |
|
|
| T |
23678257 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtgtaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
23678356 |
T |
|
| Q |
110 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
197 |
Q |
| |
|
|| ||||| |||||||| ||| |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
|
|
| T |
23678357 |
atcttgaaaaagtttggcatgaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
23678444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 27206896 - 27206709
Alignment:
| Q |
10 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
109 |
Q |
| |
|
|||||||| |||||| ||| | || |||||||||||||| ||||| |||||||||| || ||||||| || ||||||||||||| ||||||||| || |
|
|
| T |
27206896 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtttaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
27206797 |
T |
|
| Q |
110 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
197 |
Q |
| |
|
|| ||||| |||||||| || |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
|
|
| T |
27206796 |
atcttgaaaaagtttggcataaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
27206709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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