View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17343_low_7 (Length: 496)

Name: NF17343_low_7
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17343_low_7
NF17343_low_7
[»] chr4 (4 HSPs)
chr4 (8-480)||(6612614-6613085)
chr4 (37-416)||(27014841-27015220)
chr4 (53-404)||(42329360-42329711)
chr4 (49-126)||(25176988-25177065)
[»] scaffold0381 (1 HSPs)
scaffold0381 (37-416)||(4563-4942)
[»] chr5 (1 HSPs)
chr5 (91-480)||(22789884-22790272)
[»] chr8 (2 HSPs)
chr8 (14-356)||(29383150-29383492)
chr8 (301-417)||(43222040-43222156)
[»] chr3 (3 HSPs)
chr3 (61-401)||(54565320-54565662)
chr3 (247-416)||(12530143-12530312)
chr3 (35-418)||(44491147-44491530)
[»] chr2 (1 HSPs)
chr2 (108-417)||(45009939-45010247)
[»] chr1 (2 HSPs)
chr1 (255-401)||(41327550-41327696)
chr1 (255-401)||(41337782-41337927)
[»] chr6 (6 HSPs)
chr6 (56-404)||(11609151-11609499)
chr6 (255-418)||(20916349-20916512)
chr6 (255-401)||(20926302-20926447)
chr6 (255-332)||(20916791-20916868)
chr6 (233-296)||(17395936-17395999)
chr6 (44-138)||(17395751-17395845)
[»] chr7 (4 HSPs)
chr7 (103-215)||(3208804-3208916)
chr7 (16-173)||(23159480-23159637)
chr7 (301-417)||(8866223-8866339)
chr7 (82-269)||(8866007-8866194)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Complemental strand, 6613085 - 6612614
Alignment:
Q  8 caccacagatacaccaaggatctgcatattgattagacaactgacgaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaacc 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6613085 caccaaagatacaccaaggatctgcatattgattagacaactgacgaagaaactcccacgcagctctcctacgttccccattggggtacccgtagtaacc 6612986  T
Q  108 ggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6612985 ggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcatgcaattagaagaggtacgccaaaat 6612886  T
Q  208 aaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtg 307  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  6612885 aaagcaaggccaccactcctaccggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacgtaaaacttcaattttatttcgggatactagtg 6612786  T
Q  308 tctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaactgat 407  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||    
T  6612785 tctcacttaagaagagtacgtccggattgaagtgctgaaggagatattttaaatcaggagttgcgctcgggctaccc-aacctcggcaattccaaccgat 6612687  T
Q  408 aacactcatttgttggacactaaaccatgtctgatgtattggcataggcaagacatgatctgatcatagtatg 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612686 aacactcatttgttggacactaaaccatgtctgatgtattggcataggcaagacatgatctgatcatagtatg 6612614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 37 - 416
Target Start/End: Original strand, 27014841 - 27015220
Alignment:
Q  37 tgattagacaactgacgaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtctccaagtaccatgaacagaat 136  Q
    |||||| | ||||| ||||| || |||||||||   | |||||||||||| |  |||||||||||||| |||||||||||||||| |||||||||||| |    
T  27014841 tgattacataactgtcgaaggaaatcccacgcaagacgcctacgtcccccttcagggtacccgtagtatccggtgagtctccaaggaccatgaacagagt 27014940  T
Q  137 caaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgca 236  Q
    |   || |||||| ||||| ||||| || ||||||||  ||||    ||||||||||| || ||||  ||||||||||| ||||| || |||  ||||||    
T  27014941 cggtaatttcaacggtaatgtgattgttggaataatttgcaagttgacaattagaagaagtgcgccggaataaagcaagaccaccgcttctattggtgca 27015040  T
Q  237 atcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattg 336  Q
    |||||| |||||||| ||||||||||| ||||| || || ||||| ||||||||||||||    || | |||||||||||| ||||||| ||| ||||||    
T  27015041 atcaacagaaaaacaagaatcaaaaccgagcaaatatcgaaaaacttcaattttatttcggcgaaccaatgtctcacttaaaaagagtatgtctggattg 27015140  T
Q  337 aagtggcgaacgagatattttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaactgataacactcat 416  Q
    ||||| |||||||||||||| |||||| ||  ||||||| |||| || || || ||||| |||||||| |||||||||||    
T  27015141 aagtgtcgaacgagatatttcaaatcaggaactgcgctcgggctgcctaatccccggcagttccaactaataacactcat 27015220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 404
Target Start/End: Complemental strand, 42329711 - 42329360
Alignment:
Q  53 gaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgt 152  Q
    ||||||||||||||||||| | ||||||||||||||| |||||||| ||||| || || ||| |||||| ||   ||  |||||||| ||  ||||||||    
T  42329711 gaagaaactcccacgcagcacgcctacgtcccccattagggtacccatagtagccagtaagtttccaaggacgcagattagaatcaacaatctcaactgt 42329612  T
Q  153 aatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacag 252  Q
     ||||| ||||| ||||||| || |||    ||||||  ||| ||  | ||||| |||||||| || || || ||| |||| |  ||||| |||||||||    
T  42329611 tatatggttatttgaataatcaataagttgacaattaagagaagtgtgtcaaaagaaagcaagtccgccgcttctaccggttcggtcaacagaaaaacag 42329512  T
Q  253 gaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagat 352  Q
    || | ||||||||| |  ||||  ||  | ||||||||||| ||    |||| |||||||||||| || |  | ||||||||||||||| ||||| || |    
T  42329511 gagttaaaaccaagaacataacataattcttcaattttattacggtggactaatgtctcacttaaaaataagaggtccggattgaagtgccgaactaggt 42329412  T
Q  353 attttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaact 404  Q
    | ||||||||  || ||||  || ||||||||||||| | ||||||||||||    
T  42329411 actttaaatctggaattgcattcgggctacccaaacccctgcaattccaact 42329360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 25176988 - 25177065
Alignment:
Q  49 tgacgaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtctccaagtacca 126  Q
    |||||| |||| ||||| ||||| | |||| |||||||||||||||||| |||||| |  ||||||||| ||||||||    
T  25176988 tgacgaggaaagtcccaggcagcacgcctatgtcccccattggggtacctgtagtagcatgtgagtctctaagtacca 25177065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 37 - 416
Target Start/End: Complemental strand, 4942 - 4563
Alignment:
Q  37 tgattagacaactgacgaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtctccaagtaccatgaacagaat 136  Q
    |||||| | ||||| ||||| || |||||||||   | |||||||||||| |  |||||||||||||| |||||||||||||||| |||||||||||| |    
T  4942 tgattacataactgtcgaaggaaatcccacgcaagacgcctacgtcccccttcagggtacccgtagtatccggtgagtctccaaggaccatgaacagagt 4843  T
Q  137 caaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgca 236  Q
    |   || |||||| ||||| ||||| || ||||||||  ||||    ||||||||||| || ||||  ||||||||||| ||||| || |||  ||||||    
T  4842 cggtaatttcaacggtaatgtgattgttggaataatttgcaagttgacaattagaagaagtgcgccggaataaagcaagaccaccgcttctattggtgca 4743  T
Q  237 atcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattg 336  Q
    |||||| |||||||| ||||||||||| ||||| || || ||||| ||||||||||||||    || | |||||||||||| ||||||| ||| ||||||    
T  4742 atcaacagaaaaacaagaatcaaaaccgagcaaatatcgaaaaacttcaattttatttcggcgaaccaatgtctcacttaaaaagagtatgtctggattg 4643  T
Q  337 aagtggcgaacgagatattttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaactgataacactcat 416  Q
    ||||| |||||||||||||| |||||| ||  ||||||| |||| || || || ||||| |||||||| |||||||||||    
T  4642 aagtgtcgaacgagatatttcaaatcaggaactgcgctcgggctgcctaatccccggcagttccaactaataacactcat 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 91 - 480
Target Start/End: Original strand, 22789884 - 22790272
Alignment:
Q  91 gggtacccgtagtaaccggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattag 190  Q
    |||||||||||||||||||||| |||||||  ||| ||||||||||||| ||  || || |  ||||||||||| ||||| || |||| |   || |||     
T  22789884 gggtacccgtagtaaccggtgaatctccaaacaccttgaacagaatcaacaacgtctacagacatatgattatttgaatagtttacaatctgacagttaa 22789983  T
Q  191 aagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaatttt 290  Q
    |||| |  ||||||||||| |||||||||||||| ||| |    |||||||| ||||| ||  ||||||||||||||| || ||| ||| | ||||||||    
T  22789984 aagaagcgcgccaaaataatgcaaggccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaatttt 22790083  T
Q  291 atttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctacccaaacct 390  Q
    ||| ||    |||| ||||||||||||||| | ||   ||||||||||||| ||||| || || |||||||||  | |||| ||| ||||||| |||||     
T  22790084 attacggtggactaatgtctcacttaagaataatagaaccggattgaagtgccgaactaggtactttaaatcagaaattgcactcgggctacctaaaccc 22790183  T
Q  391 cggcaattccaactgataacactcatttgttggacactaaaccatgtctgatgtattggcataggcaagacatgatctgatcatagtatg 480  Q
    | ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||| |||||||||||||    
T  22790184 ctgcaattccaaccgataacactcatttgttggacactaaa-catgtctgatgcaatggcgtaggcaagacatgatatgatcatagtatg 22790272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 29383492 - 29383150
Alignment:
Q  14 agatacaccaaggatctgcatattgattagacaactgacgaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgag 113  Q
    |||||||||| |||  ||||| ||||  ||| || | ||| ||||| ||||||| ||| | |||||||| |||||| ||||||| ||||||| |||||||    
T  29383492 agatacaccatggacttgcattttgaccagataaattacggagaaagtcccacgtagcacgcctacgtcgcccattagggtacctgtagtaatcggtgag 29383393  T
Q  114 tctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagca 213  Q
    | ||||   |||| ||||| | |||| || |||||  ||||| |||||||||||| ||||||||||    |||| |  ||| || ||||| |||||||||    
T  29383392 tatccataaaccaagaacatagtcaacaatttcaatagtaatgtgattattagaaaaattaacaagttgacaatgaagagaagtgcgccacaataaagca 29383293  T
Q  214 aggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcac 313  Q
    || || || |  ||| |||||| ||||||  |||| || ||||||||||| ||||| ||||| ||| | ||||||||||||||    |||||||||||||    
T  29383292 agaccgcctccactaccggtgcgatcaacataaaagcaagaatcaaaacccagcaaataacgtaaatcttcaattttatttcggtggactagtgtctcac 29383193  T
Q  314 ttaagaagagtacgtccggattgaagtggcgaacgagatattt 356  Q
    |||| || |||| ||||  ||||||||  |||||||| |||||    
T  29383192 ttaaaaatagtaggtccatattgaagtatcgaacgaggtattt 29383150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 417
Target Start/End: Original strand, 43222040 - 43222156
Alignment:
Q  301 actagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctacccaaacctcggcaattcc 400  Q
    ||||||||||||| |||||| || |   |||||||| |||  |||||||||||||||||||||| | || ||||| |  ||||||| || || |||||||    
T  43222040 actagtgtctcacataagaaaaggatagccggattgtagtaccgaacgagatattttaaatcaaaaattacgctcggattacccaatccccgacaattcc 43222139  T
Q  401 aactgataacactcatt 417  Q
    |||| |||| |||||||    
T  43222140 aactaataatactcatt 43222156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 61 - 401
Target Start/End: Original strand, 54565320 - 54565662
Alignment:
Q  61 tcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgat 160  Q
    |||||||| |||| |||| ||||||| |  |||||||||||||| ||  |||  ||||||  ||||||||| ||||||| ||  ||||| | ||||||||    
T  54565320 tcccacgctgctcgcctatgtcccccttcagggtacccgtagtagccaatgaacctccaaacaccatgaacggaatcaacaacgtcaacagaaatatgat 54565419  T
Q  161 tattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaa 260  Q
    |||| ||  ||||  ||| |   || ||| |||||| |||||||||||| |||||||||||||| ||| | || |||||||| ||||||||  |||||||    
T  54565420 tatttgagcaatttgcaatctgacagttaaaagaggcacgccaaaataatgcaaggccaccacttctaccagtacaatcaacagaaaaacaaaaatcaaa 54565519  T
Q  261 accaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagta-cgtccggattgaagtggcgaacgagatattttaa 359  Q
    | |||||| |||||| | | | ||||||||||| ||    |||| |||||||||||| || | ||  ||||||||| ||||| ||||| |  || |||||    
T  54565520 atcaagcacgtaacgtagagcttcaattttattacgatggactaatgtctcacttaaaaataatagggtccggattaaagtgccgaactatgtactttaa 54565619  T
Q  360 atcaagagttgcgctcaggcta-cccaaacctcggcaattcca 401  Q
    ||||||| |||||||  ||||| |||||||| || ||||||||    
T  54565620 atcaagaattgcgcttgggctaccccaaaccccgtcaattcca 54565662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 247 - 416
Target Start/End: Original strand, 12530143 - 12530312
Alignment:
Q  247 aaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcg-tgatactagtgtctcacttaagaagagtacgtccggattgaagtggcga 345  Q
    ||||| ||||||||||| ||||| || || ||| | |||||||||||||| ||| || | ||||| |||||| ||||||||||| ||||||||||| |||    
T  12530143 aaacaagaatcaaaaccgagcaaatatcgaaaagcttcaattttatttcggtga-accaatgtctgacttaaaaagagtacgtctggattgaagtgtcga 12530241  T
Q  346 acgagatattttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaactgataacactcat 416  Q
    ||||||||||| |||||| ||  ||||||| |||| || || || ||||| |||||||| |||||||||||    
T  12530242 acgagatatttcaaatcaggaactgcgctcgggcttcctaatccccggcagttccaactaataacactcat 12530312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 418
Target Start/End: Complemental strand, 44491530 - 44491147
Alignment:
Q  35 attgattagacaactgacgaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtctccaagtaccatgaacaga 134  Q
    ||||||||||||| | |||||| || |||||||||  ||| | ||||||||  |  ||||||||||||||||||||||| |||||   |||| |||||||    
T  44491530 attgattagacaaattacgaaggaaatcccacgcaagtcttcgacgtccccgttcagggtacccgtagtaaccggtgagcctccacaaaccaagaacaga 44491431  T
Q  135 atcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtg 234  Q
    ||| | ||  |||||    |||||||| |  ||||| |||||||     |||||| | || |  |||||||||||||||||||| || |  ||| |  |     
T  44491430 atccataacatcaacatatatatgattttgtgaatagttaacaatttgacaattaaaggacgcgcgccaaaataaagcaaggcctccgcctctaccaatt 44491331  T
Q  235 caatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggat 334  Q
    | |||||  ||||| ||  ||||||| |||||||||||||| ||  | ||||||||||||||    ||||| |||||| |||| || |  | ||||||||    
T  44491330 cgatcaaaagaaaagcaaaaatcaaagccaagcaagtaacgtaattcttcaattttatttcggtggactagcgtctcagttaaaaataaaaggtccggat 44491231  T
Q  335 tgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaactgataacactcattt 418  Q
    ||||||  ||||| || || ||||||||  || ||||  || ||||||||||||| | |||||||||||| || | ||||||||    
T  44491230 tgaagtaccgaactaggtactttaaatctggaattgcattcgggctacccaaacccctgcaattccaacttattagactcattt 44491147  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 108 - 417
Target Start/End: Complemental strand, 45010247 - 45009939
Alignment:
Q  108 ggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaat 207  Q
    |||||||||||||| |||| |||||||||||| || |||||| |||||||||||||||||| ||| ||||||  ||||| ||||||    | ||||||||    
T  45010247 ggtgagtctccaaggaccaagaacagaatcaataatttcaacagtaatatgattattagaaaaatcaacaagattgcaactagaagtatgatgccaaaat 45010148  T
Q  208 aaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtg 307  Q
    || ||||| || ||||  ||  | ||||  ||||| || | ||| |||||||||||||| ||||||   ||  | ||||||||||||||    ||||  |    
T  45010147 aaggcaagacccccacctcttccagtgcggtcaactgagatacaagaatcaaaaccaagtaagtaaaataattcttcaattttatttcgatggactaaag 45010048  T
Q  308 tctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaactgat 407  Q
    |||||||||||||||| | ||||||||| ||||| ||||  || ||||| || ||  || |||||||| ||||||| ||||| || ||||||||||| ||    
T  45010047 tctcacttaagaagaggatgtccggattaaagtgccgaattaggtatttcaagtcgggaattgcgctcgggctacctaaacc-cgacaattccaacttat 45009949  T
Q  408 aacactcatt 417  Q
     | |||||||    
T  45009948 cagactcatt 45009939  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 255 - 401
Target Start/End: Complemental strand, 41327696 - 41327550
Alignment:
Q  255 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatat 354  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||||||||||||  |||| || |||    
T  41327696 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtat 41327597  T
Q  355 tttaaatcaagagttgcgctcaggctacccaaacctcggcaattcca 401  Q
    ||||  |||  | ||||||||  |||||| ||||| |||||||||||    
T  41327596 tttaggtcagcaattgcgctcgagctacctaaaccccggcaattcca 41327550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 401
Target Start/End: Complemental strand, 41337927 - 41337782
Alignment:
Q  255 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatat 354  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||||||||||||  |||| || |||    
T  41337927 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtat 41337828  T
Q  355 tttaaatcaagagttgcgctcaggctacccaaacctcggcaattcca 401  Q
    ||||  |||  | ||||||||  |||||| |||||| ||||||||||    
T  41337827 tttaggtcagcaattgcgctcgagctacctaaacct-ggcaattcca 41337782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 404
Target Start/End: Original strand, 11609151 - 11609499
Alignment:
Q  56 gaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaat 155  Q
    |||||||||||||| | | ||||||||||||||| |||||||||||||| ||||| ||| |||||| |||  ||  | |||||| ||  |||| ||| ||    
T  11609151 gaaactcccacgcaacacgcctacgtcccccattagggtacccgtagtagccggtaagtttccaaggacccagattataatcaataatctcaattgttat 11609250  T
Q  156 atgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaa 255  Q
    ||| ||||| ||||||| || |||    ||||||  ||| || |||||||| |||||||| || || || ||| |||| |  ||||| |||||||| ||     
T  11609251 atggttatttgaataatcaataagttgacaattaagagaagtgcgccaaaagaaagcaagaccgccgcttctaccggttcggtcaacagaaaaacatgag 11609350  T
Q  256 tcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatatt 355  Q
    ||||||||||| |  ||||  ||  | |||||||| || ||    |||| |||||| ||||| || |  | |||||||||||| || ||||| || || |    
T  11609351 tcaaaaccaagaacataacataattcttcaatttttttacggtggactaatgtctctcttaaaaataagaggtccggattgaattgccgaactaggtact 11609450  T
Q  356 ttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaact 404  Q
    |||||||  || ||||  || ||||||||||||| | ||||||||||||    
T  11609451 ttaaatctggaattgcattcgggctacccaaacccctgcaattccaact 11609499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 418
Target Start/End: Complemental strand, 20916512 - 20916349
Alignment:
Q  255 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatat 354  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||| |||||| |  |||| || | |    
T  20916512 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccgggttgaagggtagaactaggtgt 20916413  T
Q  355 tttaaatcaagagttgcgctcaggctacccaaacctcggcaattccaactgataacactcattt 418  Q
    ||||  ||  || ||||||||  |||||| ||||| ||||||||||| |  |||| ||||||||    
T  20916412 tttaggtcgggaattgcgctcgagctacctaaaccccggcaattccaccctataagactcattt 20916349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 401
Target Start/End: Complemental strand, 20926447 - 20926302
Alignment:
Q  255 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatat 354  Q
    ||||||||||||||| |||||  || | ||||||||||||||    |||| | |||||||||||||||| | ||| ||||||||||| ||| | |  |||    
T  20926447 atcaaaaccaagcaaataacgtcaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtctggattgaagtgtcgagctaagtat 20926348  T
Q  355 tttaaatcaagagttgcgctcaggctacccaaacctcggcaattcca 401  Q
    ||||  ||| || ||||||||  |||||| |||||| ||||||||||    
T  20926347 tttaggtcaggaattgcgctcgagctacctaaacct-ggcaattcca 20926302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 20916868 - 20916791
Alignment:
Q  255 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccgg 332  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | ||||||    
T  20916868 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccgg 20916791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 17395936 - 17395999
Alignment:
Q  233 tgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcg 296  Q
    |||||||||  |||||||| |||| ||||||||||| || ||| ||||| ||||||||||||||    
T  17395936 tgcaatcaaaagaaaaacaagaataaaaaccaagcatgttacgaaaaacttcaattttatttcg 17395999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 17395751 - 17395845
Alignment:
Q  44 acaactgacgaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtctccaagtaccatgaacagaatca 138  Q
    |||| ||||||||||| ||||||||||| |  |||  | ||||||  || ||||||||||| ||||||||||||||   |||| |||||||||||    
T  17395751 acaaatgacgaagaaaatcccacgcagcacgtctaacttccccataaggatacccgtagtatccggtgagtctccataaaccaagaacagaatca 17395845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 3208804 - 3208916
Alignment:
Q  103 taaccggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgcc 202  Q
    |||||||| ||||||||| ||||| |||||  ||||| || |||||| |||||||| ||  ||||| ||| ||||||  ||||||   ||||| ||||||    
T  3208804 taaccggtaagtctccaaataccaagaacattatcaataatttcaacagtaatatggttgctagaaaaatcaacaagtctgcaatgtaaagagttacgcc 3208903  T
Q  203 aaaataaagcaag 215  Q
    |||||||||||||    
T  3208904 aaaataaagcaag 3208916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 23159637 - 23159480
Alignment:
Q  16 atacaccaaggatctgcatattgattagacaactgacgaagaaactcccacgcagctctcctacgtcccccattggggtacccgtagtaaccggtgagtc 115  Q
    |||||||||||| |||||||||| | |||||| | ||  || || ||| || || ||  |||| || |||||||||||||||| ||||| ||| | || |    
T  23159637 atacaccaaggacctgcatattgttcagacaagttacagaggaaatcctacacaacttgcctatgttccccattggggtacccatagtagccgataagcc 23159538  T
Q  116 tccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataatt 173  Q
    |||||| |||| ||  ||| |||| || |||||| ||||| || ||||||||||||||    
T  23159537 tccaagaaccaagagtagagtcaacaatttcaacggtaatgtggttattagaataatt 23159480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 417
Target Start/End: Original strand, 8866223 - 8866339
Alignment:
Q  301 actagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctacccaaacctcggcaattcc 400  Q
    ||||||||||||||||| || |||| |||| |||||||||| ||||| || ||||| || ||  || ||||| |  ||||||| || || || |||||||    
T  8866223 actagtgtctcacttaaaaatagtaggtcctgattgaagtgccgaaccaggtatttcaagtccggaattgcgttagggctacctaagccccgacaattcc 8866322  T
Q  401 aactgataacactcatt 417  Q
    ||||||| | |||||||    
T  8866323 aactgatcaaactcatt 8866339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 8866007 - 8866194
Alignment:
Q  82 cccccattggggtacccgtagtaaccggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcg 181  Q
    ||||| ||||| || |||||||| ||||| |||||||| |||||| ||||||| |||| || |||||  || ||||||||||| || ||||  |||||      
T  8866007 ccccctttgggataaccgtagtagccggtaagtctccatgtaccaagaacagagtcaacaatttcaatagtgatatgattatttgagtaatcgacaagtt 8866106  T
Q  182 tgcaattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaa 269  Q
      | |||  |||| || ||||| ||||||||||| || ||||  ||  ||||||  ||||| |||| |||  ||||||||||||||||    
T  8866107 gaccatttaaagaagtgcgccagaataaagcaagacccccaccgctgccggtgcggtcaacagaaatacaacaatcaaaaccaagcaa 8866194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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