View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_low_9 (Length: 482)
Name: NF17343_low_9
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 47627537 - 47627259
Alignment:
| Q |
12 |
atgaaggatgagtgtattaaaaaatgtcaaattcttagaaaaaatattttcataaatgtaagcaacaaacatcgagtctgtttacagatctttttggatc |
111 |
Q |
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| T |
47627537 |
atgaaggatgagtgtattcaaaaatgtcaaattcctagaaaaaatattttcataaatgtaagcaacaaacatcgagtctgtttacagatctttttggatc |
47627438 |
T |
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| Q |
112 |
tgttattttttatgtattgtaaatt-aaacatttgagtcannnnnnnnnncctgtaaatacaactgatgataaaaatattgcatgagacaagtttgaact |
210 |
Q |
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| T |
47627437 |
tgttattttttatgtattgtaaattaaaacatttgagtca--ttttttttcctgtaaatacaactgatgataataatatcgcatgagacaagtttgaact |
47627340 |
T |
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| Q |
211 |
tgcaatactcatcttctctatattttgtgtgtgatcatgcaacnnnnnnnnncacttcatatacgaaacaaatctaataatat |
293 |
Q |
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| T |
47627339 |
tgcaatactcatcttctctatattttgtgtatgatcatgcaac--aaaaaaacacttcatatacgaaacaaatctaataatat |
47627259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 326 - 465
Target Start/End: Complemental strand, 47626886 - 47626751
Alignment:
| Q |
326 |
ctactcaatttactattggacctcactttagggaaataaaaaccccaaacccacgttttggcgcgaaagattgcttcattctctcgtttcttccaccact |
425 |
Q |
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| T |
47626886 |
ctactcaatttactattggacctcactttagggaaataaaaaccccaaacccacgttttggcgcgaaagattgcttcattctctcgtttcttccaccact |
47626787 |
T |
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| Q |
426 |
catcactactagggtttaatcaatcgttttgtaatctctg |
465 |
Q |
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| T |
47626786 |
catcactactagggttt----aatcgttttgtaatctctg |
47626751 |
T |
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