View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17344_high_1 (Length: 631)
Name: NF17344_high_1
Description: NF17344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17344_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 36 - 616
Target Start/End: Complemental strand, 4283309 - 4282729
Alignment:
| Q |
36 |
tgtgaagtagttatttcagcatcatcagaaagatcactttgggagaagattatatcgaatttaatcaagagtgagaaagaataagagttcgacaataata |
135 |
Q |
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| T |
4283309 |
tgtgaagtagttatttcagcattatcagaaagatcactttgggagaagattatatcgaatttaatcaagagtgagaaagaataagagttcgacaataata |
4283210 |
T |
|
| Q |
136 |
tgttttattaaaattcaaggtactaccacctagtagtttttaatacaaaaatcaagcattttttctaggtactaccctccatcatactcttttcaccctc |
235 |
Q |
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| T |
4283209 |
tgttttattaaaattcaaggtactaccacctagtagtttttaatacaaaaatcaagcattttttctaggtactaccctccatcatactcttttcaccctc |
4283110 |
T |
|
| Q |
236 |
atgtctctttttgtacacaaaacctttggctatcaacaaataaacacaaagattcacagcacttaacacagccaacacccaataaaagtaatcaagatgt |
335 |
Q |
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| T |
4283109 |
atgtctctttttgtacacaaaacctttggctatcaacaaataaacacaaagatttagagcacttaacacagccaacacccaataaaagtaatcaagatgt |
4283010 |
T |
|
| Q |
336 |
gccctattcaaatcatttcccaaccattctccaccagtccttgtagtaatatccactacaacagttataacaccattgctaacaaaacttccaactccaa |
435 |
Q |
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| T |
4283009 |
gccctattcaaatcatttcccaaccattttccaccaatccttgtagtaatatccactacaacaattataacaccattgctaacaaaacttccaactccaa |
4282910 |
T |
|
| Q |
436 |
gtatgcttatatatgctgcagctcccaaacttctcattgtttctggcatttgatcatagaacaattcttgtagtccaacaattgtaaatgcatcagaaat |
535 |
Q |
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| T |
4282909 |
gtatgcttatatgtgctgcagctcccaaacttctcattgtttctggcatttgatcatagaacaattcttgtagtccaacaattgtaaatgcatcagaaat |
4282810 |
T |
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| Q |
536 |
tccaagaatagtgtattgaggtaacatccaccaaatactcattggtacaatatcattgatattactatcgtctatgagatt |
616 |
Q |
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| T |
4282809 |
tccaagaatagtgtattgaggtaacatccaccaaatactcattggtacaatatcattgatattactatcgtttatgagatt |
4282729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 532
Target Start/End: Original strand, 14429224 - 14429342
Alignment:
| Q |
414 |
ctaacaaaacttccaactccaagtatgcttatatatgctgcagctcccaaacttctcattgtttctggcatttgatcatagaacaattcttgtagtccaa |
513 |
Q |
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|||||||| ||||||||||| | ||| |||||||| || || |||||||||||||||| | || ||||||||||| || || | |||||||| ||||| |
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| T |
14429224 |
ctaacaaagcttccaactcctactatacttatatacgccgccgctcccaaacttctcaatccgtccggcatttgatcgtaaaaaatttcttgtaatccaa |
14429323 |
T |
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| Q |
514 |
caattgtaaatgcatcaga |
532 |
Q |
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| T |
14429324 |
cgatagtaaacgcatcaga |
14429342 |
T |
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