View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17344_low_2 (Length: 538)
Name: NF17344_low_2
Description: NF17344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17344_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 101 - 520
Target Start/End: Original strand, 48879013 - 48879439
Alignment:
| Q |
101 |
atgttatatttacataatagattgtttttgacttgttgtgcttaagccagccatgagtattccactctcttctgtcacacttagacttagttgcctttta |
200 |
Q |
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| T |
48879013 |
atgttatatttacataatagactgtttttgacttgttgtgcttaagccagccatgagtattccactctcttctgtcacatttag------ttgcctttta |
48879106 |
T |
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| Q |
201 |
ttgcgcgttttattgcggcttttcgtgcagtccaattcccagtacttattgcaggtgtccttttcaaagctttaactccaaatggattatctttactctg |
300 |
Q |
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| T |
48879107 |
ttgcgcgttttattgcggcttttcgtgcagtccaattcccagtacttattgcaggtgtccttttcaaagctttaactccaaaaggattatctttactctg |
48879206 |
T |
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| Q |
301 |
ttgcacacacaaaggaaatgaaatcaatttcaaactaaagaaacatcaagtcacagaacaagagaatggttattatttgtggtttatagcaaccagaagc |
400 |
Q |
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| T |
48879207 |
ttgcacacacaaaggaaatgaaatcaagttcaaactaaagaaacatcaagtcacagaacaagagaatggttattatttgtggtttatagcaaccagaagc |
48879306 |
T |
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| Q |
401 |
aataacctatg-------------ttgcaacacatgtttgatggttcttatttgtaatagaaatagacttaaggaagaaataagataattaccaatcggc |
487 |
Q |
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| T |
48879307 |
aataaccaatgttgcaacacaaaattgcaacacatgtttgatggttcttatctgtaatagaaatagacttaaggaagaaataagataattaccaatcggc |
48879406 |
T |
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| Q |
488 |
aagttccagcttcaacatcgcagaccgggtagt |
520 |
Q |
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| T |
48879407 |
aagttccagcttcaacatcgcagaccgggtagt |
48879439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 48868877 - 48868950
Alignment:
| Q |
264 |
tcaaagctttaactccaaatggattatctttactctgttgcacacacaaaggaaatgaaatcaatttcaaacta |
337 |
Q |
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| T |
48868877 |
tcaaagcttttactccaaatggactgtctttactctgttgcacacacaaagaaaatgaaaccaacttcaaacta |
48868950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 32718211 - 32718286
Alignment:
| Q |
266 |
aaagctttaactccaaatggattatctttactctgttgcacacacaaaggaaatgaaatcaatttcaaactaaagaaa |
343 |
Q |
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| T |
32718211 |
aaagcttccactccaaatgaattgtctttactctgttgcacaaac--agaaaatgaaatcaacttcaaaataaagaaa |
32718286 |
T |
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