View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17344_low_3 (Length: 475)

Name: NF17344_low_3
Description: NF17344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17344_low_3
NF17344_low_3
[»] chr7 (5 HSPs)
chr7 (10-455)||(45460879-45461328)
chr7 (10-400)||(4165975-4166369)
chr7 (10-373)||(34207897-34208264)
chr7 (206-240)||(40680627-40680661)
chr7 (137-225)||(4078968-4079057)
[»] chr6 (5 HSPs)
chr6 (10-400)||(1306846-1307240)
chr6 (16-394)||(16468936-16469318)
chr6 (10-80)||(25351790-25351860)
chr6 (10-70)||(17576230-17576290)
chr6 (10-70)||(17604847-17604907)
[»] chr2 (3 HSPs)
chr2 (10-400)||(3151998-3152392)
chr2 (121-243)||(20637979-20638103)
chr2 (10-70)||(33514705-33514765)
[»] chr4 (5 HSPs)
chr4 (10-388)||(19307778-19308160)
chr4 (121-243)||(17998452-17998576)
chr4 (121-184)||(14539158-14539222)
chr4 (195-240)||(20508312-20508357)
chr4 (206-240)||(40433132-40433166)
[»] chr3 (1 HSPs)
chr3 (136-240)||(14606754-14606859)
[»] scaffold1350 (1 HSPs)
scaffold1350 (10-70)||(1113-1173)
[»] chr5 (4 HSPs)
chr5 (10-70)||(25855952-25856012)
chr5 (10-70)||(33384719-33384779)
chr5 (195-240)||(12833655-12833700)
chr5 (195-240)||(12865633-12865678)
[»] chr1 (1 HSPs)
chr1 (136-240)||(32643565-32643670)
[»] chr8 (1 HSPs)
chr8 (10-70)||(20825867-20825927)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 455
Target Start/End: Original strand, 45460879 - 45461328
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac 109  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45460879 tcatcaaccacctcattagctactaaaataccatcaatgatttgccaattttttacaaacgctgactgagtatctgagattaccgttcccataacctgac 45460978  T
Q  110 gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcgg-ttgtcaatcttggg 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||||| ||    
T  45460979 gcaaacggtttgccaacaacttcgccaaaattttatataagcatcccaccaaagcaatggggcaaaaatcattcagtcgatgcgggttgtcaatcttagg 45461078  T
Q  208 aataagagcaatgaaagtgctatttattcctttcgag--acgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa 305  Q
    ||||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  45461079 aataagatcaatgaaagtgctatttattcctttcgagggacgaccgttgcgatgaaattccaacacaaaccgcataatgtcacctttcaactccgaccaa 45461178  T
Q  306 aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaaatgat 405  Q
    || |||||| ||||| |||| |||||| ||||| |||||||| ||||||||||||| ||||||||||||||  ||||||||||| ||||||| ||| |||    
T  45461179 aaatctttaataaaatccatcggaatgccatccggacccggattcttatacccatcacaatcccacactgcagccttaacttcaatctcattgaaaggat 45461278  T
Q  406 aaatcaaactatttcctttcaaaacagataatctcccaaaattcatatca 455  Q
    |||||||| ||||||||| ||||||||||| ||||| |||||||||||||    
T  45461279 aaatcaaagtatttccttccaaaacagatagtctccgaaaattcatatca 45461328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 4166369 - 4165975
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac 109  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  4166369 tcatccaccacctcattagctactagaataccatcaagaatttggcgatcttttacaaacgctgactgagtatccgagattaccgttcccattacctgac 4166270  T
Q  110 gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttggg 207  Q
    ||||||||||||| | ||||||||||||| |||| ||||| || ||||| | ||||||||| | ||||||||| ||  ||||||     |||||||| ||    
T  4166269 gcaaacggtttgctagcaacttcgccaaaattttgtataaacagcccactagagcaatggggcgaaaatcattaagacgatgcgcacaatcaatctttgg 4166170  T
Q  208 aataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa 305  Q
    ||||||||| || || ||||||||||||||||| ||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  4166169 aataagagcgataaaggtgctatttattccttttgagaggcgaccgttgcgatgaaattccagcacaaaccgcataatgtcacctttcaaatccagccaa 4166070  T
Q  306 aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaa 400  Q
    || || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| ||||||||||| ||  ||||||||||||||||| ||||    
T  4166069 aattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacaccgcagccttaacttcagtctcagtaaa 4165975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 34207897 - 34208264
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac 109  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  34207897 tcatccaccacctcattagctactagaataccatcaagaatttggcgatcttttacaaacgctgactgagtatccgagattaccgttcccattacctgac 34207996  T
Q  110 gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttggg 207  Q
    ||||||||||||| | ||||||||||||| |||| ||||| || ||||| | ||||||||| | ||||||||| ||  ||||| |    |||||||| ||    
T  34207997 gcaaacggtttgctagcaacttcgccaaaattttgtataaacagcccactagagcaatggggcgaaaatcattaagacgatgcagacaatcaatctttgg 34208096  T
Q  208 aataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa 305  Q
    ||||||||| ||||| ||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  34208097 aataagagcgatgaaggtgctatttattccttttgagaggcgaccgttgcgatgaaattccaacacaaaccgcataatgtcacctttcaaatccagccaa 34208196  T
Q  306 aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacac 373  Q
    || || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| |||||||||||    
T  34208197 aattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacac 34208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 40680661 - 40680627
Alignment:
Q  206 ggaataagagcaatgaaagtgctatttattccttt 240  Q
    |||||||||||||||||||||||||| ||||||||    
T  40680661 ggaataagagcaatgaaagtgctattgattccttt 40680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 4078968 - 4079057
Alignment:
Q  137 aattttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcgg-ttgtcaatcttgggaataagagcaatgaaagt 225  Q
    ||||||||| || | ||||||||||| ||| |||| ||| ||||| ||  | ||||| ||||||| ||| ||||||||||||||||||||    
T  4078968 aattttatacaaacttcccaccaaagaaataggtcgaaactcattgagacgctgcgggttgtcaacctttggaataagagcaatgaaagt 4079057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 1307240 - 1306846
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac 109  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| |||||||||||| ||||||||||||||||| ||||||     
T  1307240 tcatccaccacctcattagctactagaataccatcaagaatttggcgatcttttacaaacgctgactgagtatccgagattaccgttcccattacctgat 1307141  T
Q  110 gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttggg 207  Q
    ||||||||||||| | ||||||||||||| |||| ||||| || ||||||| ||||||||| | ||||||||| ||  |||||||    |||||||| ||    
T  1307140 gcaaacggtttgctagcaacttcgccaaaattttgtataaacagcccaccagagcaatggggcgaaaatcattaagacgatgcggacaatcaatctttgg 1307041  T
Q  208 aataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa 305  Q
    ||||||||| ||||| ||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1307040 aataagagcgatgaaggtgctatttattccttttgagagacgaccgttgcgatgaaattccaacacaaaccgcataatgtcacctttcaaatccggccaa 1306941  T
Q  306 aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaa 400  Q
    || || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| ||||||||||| ||  ||||||||||||||||| ||||    
T  1306940 aattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacaccgcagccttaacttcagtctcagtaaa 1306846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 16468936 - 16469318
Alignment:
Q  16 accacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgacgcaaac 115  Q
    ||||||||||||||||||| |||||||||||| |||||   || ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  16468936 accacctcattagctactagaataccatcaagaatttggagatcttttacaaacgttgactgagtatctgagattaccgtttccattacctgacgcaaac 16469035  T
Q  116 ggtttgccaacaacttcgcc-aaattttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgc-ggttgtcaatcttgggaataag 213  Q
    | ||| | |  ||||||||| ||||||| |||||   |||||||| ||||||||| | ||||| ||| ||  ||||| |    |||||||| ||||||||    
T  16469036 gattttctagaaacttcgccaaaattttgtataaatgtcccaccagagcaatggggcgaaaataattaagacgatgcagacaatcaatcttaggaataag 16469135  T
Q  214 agcaatgaaagtgctatttattcctttcg--agacgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaaaagtct 311  Q
    ||  |||||  |||||||||||||||| |  |||||||| |||||||||||||||||||||| | ||||||||| ||||||| | ||||||||||| ||     
T  16469136 agtgatgaagatgctatttattccttttgatagacgaccgttgcgatgaaattccaacacaatctgcataatgtgacctttccaatccggccaaaattcc 16469235  T
Q  312 ttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctc 394  Q
    ||| |||| ||||  |||||| || || |||| |||||||| || ||||  |||||||||||  |  ||||||||||||||||    
T  16469236 ttaataaatcccaaaggaatgccacccggacctggactcttgtaaccattacaatcccacaccacagccttaacttcagtctc 16469318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 25351790 - 25351860
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagt 80  Q
    ||||| ||||||||||||||||  ||||| |||||||| ||||| | |||||||||||||| || ||||||    
T  25351790 tcatcgaccacctcattagctatcaaaatgccatcaaggatttgtctattttttacaaacgctgtctgagt 25351860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 17576290 - 17576230
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg 70  Q
    ||||||||||||||||||||||  | ||| |||||||| ||||||| |||||| |||||||    
T  17576290 tcatcaaccacctcattagctatcagaatgccatcaagaatttgcctatttttaacaaacg 17576230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 17604907 - 17604847
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg 70  Q
    ||||||||||||||||| ||||  | ||| |||||||| ||||||| |||||| |||||||    
T  17604907 tcatcaaccacctcattggctatcagaattccatcaagaatttgcctatttttaacaaacg 17604847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 3152392 - 3151998
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac 109  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| ||||| |||||| ||||||||||||||||| |||||||    
T  3152392 tcatccaccacctcattagctactagaataccatcaagaatttggcgatcttttacaaacgctgactaagtatccgagattaccgttcccattacctgac 3152293  T
Q  110 gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttggg 207  Q
    ||||||||||||| | ||||||||||||| |||| ||||| || ||||| | ||||||||| | ||||||||| ||  |||||||    |||||||| ||    
T  3152292 gcaaacggtttgctagcaacttcgccaaaattttgtataaacagcccactagagcaatggggcgaaaatcattaagacgatgcggacaatcaatctttgg 3152193  T
Q  208 aataagagcaatgaaagtgctatttattcctttcgagacg--accattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa 305  Q
    ||||||||| ||||| ||||||||||||||||| |||| |  | | ||||||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  3152192 aataagagcgatgaaggtgctatttattccttttgagaggtgaacgttgcgatgaaatttcagcacaaaccgcataatgtcacctttcaaatccggccaa 3152093  T
Q  306 aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaa 400  Q
    || || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| |||| |||||| ||  ||||||||||||||||| ||||    
T  3152092 aattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaattccacaccgcagccttaacttcagtctcagtaaa 3151998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 20637979 - 20638103
Alignment:
Q  121 gccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatg-cggttgtcaatcttgggaataagagcaa 218  Q
    |||||||||||||||||| ||||||| ||||| |||||| | ||||| |||| ||||||||||||  | ||  ||||||||||||| |||||||| |||     
T  20637979 gccaacaacttcgccaaaattttataaaagcaacccaccgaggcaataggtcgaaaatcattcagacgttgagggttgtcaatcttaggaataagggcat 20638078  T
Q  219 tgaaagtgctatttattcctttcga 243  Q
    ||||||||||||||||| |||||||    
T  20638079 tgaaagtgctatttatttctttcga 20638103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 33514765 - 33514705
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg 70  Q
    ||||||||||||||||||||||  | |||||||||||| ||||||| || ||| |||||||    
T  33514765 tcatcaaccacctcattagctatcagaataccatcaagaatttgcctatctttcacaaacg 33514705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 19308160 - 19307778
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac 109  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||||||| || || |||||||||| || |||||| || |  |    
T  19308160 tcatccaccacctcattagctactagaataccatcaaggatttgtcgatcttttacaaacgttgattgtgtgtctgagattatcgatcccattacattcc 19308061  T
Q  110 gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcgg-ttgtcaatcttggg 207  Q
    | |||||||||||||||||||| |||||| |||||||||  |||||||||||||||||||| | |||||||||  |  | || || ||||||||||| ||    
T  19308060 gtaaacggtttgccaacaacttggccaaaattttatatagacatcccaccaaagcaatggggcgaaaatcatttggacggtgggggttgtcaatctttgg 19307961  T
Q  208 aataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa 305  Q
    ||| |||||||||||||| |||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||     
T  19307960 aatgagagcaatgaaagtactatttattcctttagagaaacgaccgttgcgatgaaattccaacacaaaccgcataatatcacctttcaaatcctgccag 19307861  T
Q  306 aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttc 388  Q
    ||||||||| |||||||||  ||||   | ||  ||||||| ||||| || ||||| |||||||||||||| |||||||||||    
T  19307860 aagtctttaataaaacccaaaggaacaccgtctggacccgggctcttgtaaccatcacaatcccacactgctaccttaacttc 19307778  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 17998452 - 17998576
Alignment:
Q  121 gccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatg-cggttgtcaatcttgggaataagagcaa 218  Q
    |||||||||||||||||| ||||||| ||||| |||||| | ||||| |||| ||||||||||||  | ||  ||||||||||||| |||||||| |||     
T  17998452 gccaacaacttcgccaaaattttataaaagcaacccaccgaggcaataggtcgaaaatcattcagacgttgagggttgtcaatcttaggaataagggcat 17998551  T
Q  219 tgaaagtgctatttattcctttcga 243  Q
    ||||||||||||||||| |||||||    
T  17998552 tgaaagtgctatttatttctttcga 17998576  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 14539158 - 14539222
Alignment:
Q  121 gccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcag 184  Q
    |||||||||||||||||| ||||||| ||||| |||||||| ||||| |||| ||||||||||||    
T  14539158 gccaacaacttcgccaaaattttatacaagcaacccaccaaggcaataggtctaaaatcattcag 14539222  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 20508357 - 20508312
Alignment:
Q  195 tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt 240  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||    
T  20508357 tgtcaatcttaggaataagagcaatgaacgtgctatttatcccttt 20508312  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 40433166 - 40433132
Alignment:
Q  206 ggaataagagcaatgaaagtgctatttattccttt 240  Q
    |||||||||||||||||||| ||||||||||||||    
T  40433166 ggaataagagcaatgaaagtactatttattccttt 40433132  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 14606859 - 14606754
Alignment:
Q  136 aaattttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatg-cggttgtcaatcttgggaataagagcaatgaaagtgctatttat 234  Q
    |||||||||| ||||| ||||| | ||||||||||| |||||||||||| || ||  |||| |||||| | ||||| |||||||||||||| ||||| ||    
T  14606859 aaattttatacaagcaccccactagagcaatgggtcgaaaatcattcaggtgttgagggttatcaatcataggaatcagagcaatgaaagtactattgat 14606760  T
Q  235 tccttt 240  Q
    ||||||    
T  14606759 tccttt 14606754  T

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Target: scaffold1350 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 1113 - 1173
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg 70  Q
    ||||| ||||||||||| ||||  |||||||||||||| ||||||| |||||| |||||||    
T  1113 tcatccaccacctcattggctatcaaaataccatcaagaatttgcctatttttaacaaacg 1173  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 25856012 - 25855952
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg 70  Q
    ||||||||||||||||||||||  | ||| |||||||| ||||||| |||||| |||||||    
T  25856012 tcatcaaccacctcattagctatcagaatgccatcaagaatttgcctatttttaacaaacg 25855952  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 33384779 - 33384719
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg 70  Q
    ||||||||||||||||||||||  | ||| |||||||| ||||||| |||||| |||||||    
T  33384779 tcatcaaccacctcattagctatcagaattccatcaagaatttgcctatttttaacaaacg 33384719  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 12833655 - 12833700
Alignment:
Q  195 tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt 240  Q
    |||||| ||| ||||||||||||||||| ||||||||||| |||||    
T  12833655 tgtcaaccttaggaataagagcaatgaacgtgctatttatcccttt 12833700  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 12865633 - 12865678
Alignment:
Q  195 tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt 240  Q
    |||||| ||| ||||||||||||||||| ||||||||||| |||||    
T  12865633 tgtcaaccttaggaataagagcaatgaacgtgctatttatcccttt 12865678  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 32643565 - 32643670
Alignment:
Q  136 aaattttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcgg-ttgtcaatcttgggaataagagcaatgaaagtgctatttat 234  Q
    ||||||||||||||||||| |  ||||||||||| | ||||||||||||  | || ||    |||||||| ||||||||||||||||| | ||| |||||    
T  32643565 aaattttatataagcatccaattaaagcaatggggcgaaaatcattcagtcgttgaggacaatcaatcttaggaataagagcaatgaaggagctgtttat 32643664  T
Q  235 tccttt 240  Q
     |||||    
T  32643665 cccttt 32643670  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 20825867 - 20825927
Alignment:
Q  10 tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg 70  Q
    ||||||||||||||||||||||  | ||| |||||||| || |||| |||||| |||||||    
T  20825867 tcatcaaccacctcattagctatcagaatgccatcaagaatatgcctatttttaacaaacg 20825927  T

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