View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17344_low_4 (Length: 430)

Name: NF17344_low_4
Description: NF17344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17344_low_4
NF17344_low_4
[»] chr1 (2 HSPs)
chr1 (18-272)||(49247390-49247644)
chr1 (23-64)||(49711757-49711798)
[»] chr5 (3 HSPs)
chr5 (272-421)||(31698245-31698394)
chr5 (295-421)||(8726126-8726251)
chr5 (276-388)||(42838094-42838206)
[»] chr3 (2 HSPs)
chr3 (273-420)||(34279533-34279680)
chr3 (309-382)||(7237770-7237843)
[»] scaffold0057 (1 HSPs)
scaffold0057 (304-375)||(41295-41366)
[»] chr4 (1 HSPs)
chr4 (305-405)||(25352409-25352509)
[»] chr6 (1 HSPs)
chr6 (276-388)||(22501846-22501958)
[»] chr7 (1 HSPs)
chr7 (309-388)||(24768348-24768427)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 49247390 - 49247644
Alignment:
Q  18 ttaacttgccaaaatgttaatcatttgaaaaactagtaacttgcaaagtagtttcacccatgttaatatatactattagtttctggtatggaaaacttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49247390 ttaacttgccaaaatgttaatcatttgaaaaactagtaacttgcaaagtagtttcacccatgttaatatatactattagtttctggtatggaaaacttga 49247489  T
Q  118 ggtaatattttatagtccttatgccattagacttgcagtaggaaactatgggcagaaaagctagagatatgatatcttccatgattttcttatttgagag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49247490 ggtaatattttatagtccttatgccattagacttgcagtaggaaactatgggcagaaaagctagagatatgatatcttccatgattttcttatttgagag 49247589  T
Q  218 gacaacaaaattaaaatattgtacaaaattctatattggaatctaataatttgat 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49247590 gacaacaaaattaaaatattgtacaaaattctatattggaatctaataatttgat 49247644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 49711757 - 49711798
Alignment:
Q  23 ttgccaaaatgttaatcatttgaaaaactagtaacttgcaaa 64  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  49711757 ttgccaaaaagtttatcatttgaaaaactagtaacttgcaaa 49711798  T

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Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 272 - 421
Target Start/End: Original strand, 31698245 - 31698394
Alignment:
Q  272 tgggaaatgttttatagacacaccctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaa 371  Q
    |||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  31698245 tgggaaatgtttcatagacataccattttctacacctctcttatacacatgcccatgtggatggcaattttgtagtgttgttaaaaagttaagggtaaaa 31698344  T
Q  372 atgatatttcacgtgcccctttcttctaacattcccatctttcttctctg 421  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  31698345 atgagatttcacgtgcccctttcttctaacattctcatctttcttctctg 31698394  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 295 - 421
Target Start/End: Complemental strand, 8726251 - 8726126
Alignment:
Q  295 cctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatgatatttcacgtgcccctttc 394  Q
    ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8726251 ccttttctacacctct-ttatacacatgcccatgtggatggcaattttgtagtattgttaaaaagttaagggtaaaaatgagatttcacgtgcccctttc 8726153  T
Q  395 ttctaacattcccatctttcttctctg 421  Q
    ||||||||||| ||||| |||||||||    
T  8726152 ttctaacattctcatctctcttctctg 8726126  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 388
Target Start/End: Original strand, 42838094 - 42838206
Alignment:
Q  276 aaatgttttatagacacaccctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatga 375  Q
    ||||| || ||||||||||  |||| |  ||| ||||||||||| |||||||||||||| ||  |||||| | |||||||||||  | |||||||| |||    
T  42838094 aaatgattcatagacacactttttcttgtacccctcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattga 42838193  T
Q  376 tatttcacgtgcc 388  Q
     ||||||||||||    
T  42838194 gatttcacgtgcc 42838206  T

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Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 420
Target Start/End: Complemental strand, 34279680 - 34279533
Alignment:
Q  273 gggaaatgttttatagacacaccctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaa 372  Q
    |||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34279680 gggaaatgattcatagacacacccttttctacacctcttttatacacatgcccatgtggatggcaattttgtagtattgttaaaaagttaagggtaaaaa 34279581  T
Q  373 tgatatttcacgtgcccctttcttctaacattcccatctttcttctct 420  Q
    ||| ||||||| ||||||| ||||||||||| | ||||| ||||||||    
T  34279580 tgagatttcacatgcccctctcttctaacatactcatctctcttctct 34279533  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 7237843 - 7237770
Alignment:
Q  309 ctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatgatatttca 382  Q
    ||||||||||| |||||||||||||| ||  |||||| | |||||||||||  | |||||||| ||| ||||||    
T  7237843 ctcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttca 7237770  T

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Target: scaffold0057 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 41295 - 41366
Alignment:
Q  304 cacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatga 375  Q
    |||||||||| |||||||||||||||||||| || || |||| |||||||||||||| | ||||||||||||    
T  41295 cacctctcttgtacacatgcccatgtggatggcagttatgtaatattgttaaaaagtcaggggtaaaaatga 41366  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 405
Target Start/End: Complemental strand, 25352509 - 25352409
Alignment:
Q  305 acctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatgatatttcacgtgcccctttcttctaacatt 404  Q
    ||||||||| |||||||| | |||||||||  | ||||||| |||||||||||| | | |||||||||||| ||||||| |  || ||||||||||||||    
T  25352509 acctctcttgtacacatgtctatgtggatggtagttttgtaatattgttaaaaaatcaggggtaaaaatgagatttcacattaccatttcttctaacatt 25352410  T
Q  405 c 405  Q
    |    
T  25352409 c 25352409  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 388
Target Start/End: Original strand, 22501846 - 22501958
Alignment:
Q  276 aaatgttttatagacacaccctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatga 375  Q
    ||||| || ||||||||||  |||| |  ||| ||||||||||| |||||||||||||| ||  |||||| | |||||||||||  | |||||||| |||    
T  22501846 aaatgattcatagacacactttttcttgtacccctcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattga 22501945  T
Q  376 tatttcacgtgcc 388  Q
     ||||||||||||    
T  22501946 gatttcacgtgcc 22501958  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 24768348 - 24768427
Alignment:
Q  309 ctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatgatatttcacgtgcc 388  Q
    ||||||||||| |||||||||||||| ||  |||||| | |||||||||||  |  ||||||| ||| ||||||||||||    
T  24768348 ctcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaagaggtaaaattgagatttcacgtgcc 24768427  T

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