View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17345_high_1 (Length: 821)

Name: NF17345_high_1
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17345_high_1
NF17345_high_1
[»] chr6 (1 HSPs)
chr6 (365-807)||(28878216-28878657)
[»] chr3 (9 HSPs)
chr3 (124-338)||(22602539-22602755)
chr3 (124-303)||(22527948-22528126)
chr3 (1-127)||(22528155-22528281)
chr3 (1-127)||(22602784-22602910)
chr3 (175-304)||(22495467-22495590)
chr3 (181-302)||(22513800-22513920)
chr3 (52-127)||(22515088-22515163)
chr3 (124-184)||(22495606-22495666)
chr3 (124-184)||(22514999-22515059)


Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 365 - 807
Target Start/End: Original strand, 28878216 - 28878657
Alignment:
Q  365 gttctacttatattcttaaatgcaaaggactattatttctggcaaaatgtccttgttatagattccattcatagattgagcttttgcttatttcttctac 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28878216 gttctacttatattcttaaatgcaaaggactattatttctggcaaaatgtccttgttatagattccattcagagattgagcttttgcttatttcttctac 28878315  T
Q  465 aattttgttgccttgtgtagaggggtttataggcaaagtatattgatggagaggggacccaatattattgtggatatgaacaaagacaaagtgatttcaa 564  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28878316 aattttgttgccttgtgtagaggggtttataggcaaaggatattgatggagaggggacccaatattattgtggatatgaacaaagacaaagtgatttcaa 28878415  T
Q  565 attctcaattgatttcttcatgcataaaagggtttaaggacaagaacatcaccaccaacaacatgccctcctggcttctcaccagcatttctggtatgta 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28878416 attctcaattgatttcttcatgcataaaagggtttaaggacaagaacatcaccaccaacaacatgccctcctggcttctcaccagcatttctggtatgta 28878515  T
Q  665 tttaattctttctaccgtacctacattaatttcttcttcatgatgaaattgtttgagtgtggacttgagaaatgtggggtagcaaatatatttgaatagt 764  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28878516 tttaattctttctaccgtacctacattaatttcttcttcatgatgaaattgtttgagtgtggacttga-aaatgtggggtagcaaatatatttgaatagt 28878614  T
Q  765 tcattcttttatttttaccagttgaatagttcaatcatatcat 807  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28878615 tcattcttttatttttaccagttgaatagttcaatcatatcat 28878657  T

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Target: chr3 (Bit Score: 160; Significance: 8e-85; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 124 - 338
Target Start/End: Complemental strand, 22602755 - 22602539
Alignment:
Q  124 cccaataatatttctagtctaacaccagtaattgcaaactgagttttcttagtattgt---aataagagtagtgatttttaatgccacgaaatacacttt 220  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||    || |||||||||||| |||||||||||||| ||||||||    
T  22602755 cccaataatatttctagtctaacaccaacaattgcaatctgagttttcttagtattgctcaaaaaagagtagtgatgtttaatgccacgaattacacttt 22602656  T
Q  221 aatgaaaatgtaagaatgttgatttttcttgttgtactactggttggtccaaaagtccaaatctgtttttaagaaaatcatgggattattgtgaaaattt 320  Q
    ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22602655 aat-aaaatgtaagaatgttgatttttcttgttatactactggttggtccaaaagtccaaatctgtttttaagaaaatcatgggattattctgaaaattt 22602557  T
Q  321 atcattcatctaaccttc 338  Q
    ||||||||||||||||||    
T  22602556 atcattcatctaaccttc 22602539  T

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Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 124 - 303
Target Start/End: Complemental strand, 22528126 - 22527948
Alignment:
Q  124 cccaataatatttctagtctaacaccagtaattgcaaactgagttttcttagtattgtaataagagtagtgatttttaatgccacgaaatacactttaat 223  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22528126 cccaataatatttctagtctaacaccaataattgcaaactgagttttcttagtattgtaataagagtagtgatttttaatgccacgaaatacactttaat 22528027  T
Q  224 gaaaatgtaagaatgttgatttttcttgttgtactactggttggtccaaaagtccaaatctgtttttaagaaaatcatgg 303  Q
    | ||||| |||||| | ||||||||||||| || || ||||||||| |||| |  ||||||||||||||| |||||||||    
T  22528026 g-aaatgcaagaatctcgatttttcttgttatattattggttggtctaaaactttaaatctgtttttaaggaaatcatgg 22527948  T

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Target: chr3; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 22528281 - 22528155
Alignment:
Q  1 tcaaaccaactcgaaattgtccctattgcnnnnnnnntaataaactatgttcgcattgttgtgatagttttaaacctccactttacggcgttcctggatg 100  Q
    |||||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22528281 tcaaaccaactcgaaattgtccctattgcaaaaaaaataataaactatgtttgcattgttgtgatagttttaaacctccactttacggcgttcctggatg 22528182  T
Q  101 ccaagatttcccgccctttccttccca 127  Q
    ||| |||||||||||||||||||||||    
T  22528181 ccatgatttcccgccctttccttccca 22528155  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 22602910 - 22602784
Alignment:
Q  1 tcaaaccaactcgaaattgtccctattgcnnnnnnnntaataaactatgttcgcattgttgtgatagttttaaacctccactttacggcgttcctggatg 100  Q
    |||||||||||||||||||||||||||||        |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  22602910 tcaaaccaactcgaaattgtccctattgcaaaaaaaataataaactatgttcttattgttgtgatagttttaaacctccactttacggcgttcctggatg 22602811  T
Q  101 ccaagatttcccgccctttccttccca 127  Q
    ||| |||||||||||||||||||||||    
T  22602810 ccatgatttcccgccctttccttccca 22602784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 22495590 - 22495467
Alignment:
Q  175 gtattgtaataagagtagtgatttttaatgccacgaaatacactttaatgaaaatgtaagaatgttgatttttcttgttgtactactggttggtccaaaa 274  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||     || ||||| ||||||||    
T  22495590 gtattataataagagtagtgatgtttaataccacgaaatacactttaatg-aaatgcaagaatgtcgatttttcttgt-----tattggtttgtccaaaa 22495497  T
Q  275 gtccaaatctgtttttaagaaaatcatggg 304  Q
     | |||||||||||||||||||||||||||    
T  22495496 cttcaaatctgtttttaagaaaatcatggg 22495467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 181 - 302
Target Start/End: Complemental strand, 22513920 - 22513800
Alignment:
Q  181 taataagagtagtgatttttaatgccacgaaatacactttaatgaaaatgtaagaatgttgatttttcttgttgtactactggttggtccaaaagtccaa 280  Q
    |||||||||||||||| |||||| ||||||| |||||||||||| ||||| | |||||| ||||||||||||| || || |||||||||||||| | |||    
T  22513920 taataagagtagtgatgtttaatcccacgaattacactttaatg-aaatgcaggaatgtcgatttttcttgttatattattggttggtccaaaacttcaa 22513822  T
Q  281 atctgtttttaagaaaatcatg 302  Q
    ||||  ||||||| ||||||||    
T  22513821 atcttcttttaaggaaatcatg 22513800  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 22515163 - 22515088
Alignment:
Q  52 cgcattgttgtgatagttttaaacctccactttacggcgttcctggatgccaagatttcccgccctttccttccca 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||  |||||||||||||||| ||||||    
T  22515163 cgcattgttgtgatagttttaaacctccactttatggcgttcctgtatgccgtgatttcccgccctttcgttccca 22515088  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 22495666 - 22495606
Alignment:
Q  124 cccaataatatttctagtctaacaccagtaattgcaaactgagttttcttagtattgtaat 184  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  22495666 cccaaaaatatttctagtctaacaccaacaattgcaaactgagttttcttagtattgtaat 22495606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 22515059 - 22514999
Alignment:
Q  124 cccaataatatttctagtctaacaccagtaattgcaaactgagttttcttagtattgtaat 184  Q
    |||||||||||||||||||||||||||  |||||| || ||||||||||||||||||||||    
T  22515059 cccaataatatttctagtctaacaccaacaattgctaattgagttttcttagtattgtaat 22514999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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