View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17345_high_2 (Length: 672)
Name: NF17345_high_2
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17345_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 9 - 658
Target Start/End: Complemental strand, 23312512 - 23311862
Alignment:
| Q |
9 |
gagatgaaggcacatgatcgaaggaaatctcctccgaacgcgacatgaattaaaaatgaaaatacgcgtagagggggagaagaaggtgcacgatcgaagg |
108 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
23312512 |
gagaagaaggcacatgatcgaaggcaatctcctccgaacgcggcatgaattaaaaatgaaaatatgcgtagagggggagaagaaggtgcgcgatcgaagt |
23312413 |
T |
|
| Q |
109 |
aaatctcctccaaacttggcatgaattaaaaatgcgaacacgcgtagagggggagaagaaggctcgcgatcgaaggaaatcttgtatggacgtgacacga |
208 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||| | ||| ||||||| |
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| T |
23312412 |
aaatctcctccgaacttggcatgaattaaaaatgcaaacacgcatagagggggagaagaaggctcgcgatagaaggcaatcttgtacgaacgcgacacga |
23312313 |
T |
|
| Q |
209 |
attaaaaatgcacaagagaaaatctgaagcataaggaaagcaaaaacaatagtctattacaggacgaccgccgcaacggaacataatctagtacaaccnn |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
23312312 |
attaaaaatgcacaagagaaaatctgaagcataaggaaagcaaaaccaatagtctattacaggacgaccgccgcagcagaacataatctagtacaaccaa |
23312213 |
T |
|
| Q |
309 |
nnnnnnnnnnnnnnnngcttaaaacagagcacgcgaacacagtccctcaagcggcacagaccgatgaaccttctgatcaggataaacattggaacggtcc |
408 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
23312212 |
aaagaaaaagaaaaaagcttgaaacagagcaggcgaacacagtccctcaagcggcacaaatcgatgaacctcttgatcaggataaacattggaacggtta |
23312113 |
T |
|
| Q |
409 |
accttgacaggagcctgaaataactccacttggatgagggcatcctcaaagccctacccccaacactgttccgcaagggccacaacctcttctgcccact |
508 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23312112 |
accttgacaggatcctgaaagaactccacttggatgagggcatccttaaagccctacccccaacactgttccgcaagggccacaacctcttctgcccact |
23312013 |
T |
|
| Q |
509 |
ctcattgaagcaaagcctccacctccg-cgaggtcttgctaaccaaagcctgtttcaaagcgagtgcttccttacccatcggtactttagccgcataagt |
607 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23312012 |
ctcattgaagcaaagcctccacctccgccgaggtcttgctaaccaaaacctgtttcaaagcgagtgcttccttacccatcggtactttagccgcataagt |
23311913 |
T |
|
| Q |
608 |
gaggacttcaatgtctgcagaaaggagtttgttaaccgcatcacgatattg |
658 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23311912 |
gaggacttcaatgtctgcagaaaggagtttgttgaccgcatcacgatattg |
23311862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 23312571 - 23312407
Alignment:
| Q |
26 |
tcgaaggaaatctcctccgaacgcgacatgaattaaaaatgaaaatacgcgtagagggggagaagaaggtgcacgatcgaaggaaatctcctccaaactt |
125 |
Q |
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|||| |||||||||||||||||||| |||| | |||||||| ||| ||| ||||| |||||||||||| || ||||||||| |||||||||| ||| |
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| T |
23312571 |
tcgacggaaatctcctccgaacgcggcatgtactaaaaatgcaaacacgtgtagattgggagaagaaggcacatgatcgaaggcaatctcctccgaacgc |
23312472 |
T |
|
| Q |
126 |
ggcatgaattaaaaatgcgaacacgcgtagagggggagaagaaggctcgcgatcgaaggaaatct |
190 |
Q |
| |
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||||||||||||||||| || | ||||||||||||||||||||| ||||||||||| |||||| |
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| T |
23312471 |
ggcatgaattaaaaatgaaaatatgcgtagagggggagaagaaggtgcgcgatcgaagtaaatct |
23312407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 30565585 - 30565743
Alignment:
| Q |
24 |
gatcgaaggaaatctcctccgaacgcgacatgaattaaaaatgaaaatacgcgtagagggggagaagaaggtgcacgatcgaaggaaatctcctccaaac |
123 |
Q |
| |
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||||||||||| |||||||| |||| |||||||||||||||||||| ||| | ||| |||||||||| || || |||||||||| |||||||||||||| |
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| T |
30565585 |
gatcgaaggaa-tctcctccaaacgttacatgaattaaaaatgaaaaaacgtgaaga-ggggagaagatggcgcgcgatcgaagg-aatctcctccaaac |
30565681 |
T |
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| Q |
124 |
ttggcatgaattaaaaatgcgaacacgcgtagagggggagaagaaggctcgcgatcgaaggaa |
186 |
Q |
| |
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| T |
30565682 |
gcgacatgaattaaaaatgtgaaaacacgaaga-ggggagaagagggcgcgcgatcgaaggaa |
30565743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 30565659 - 30565774
Alignment:
| Q |
24 |
gatcgaaggaaatctcctccgaacgcgacatgaattaaaaatgaaaatacgcgtagagggggagaagaaggtgcacgatcgaaggaaatctcctccaaac |
123 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||||||||| || || || ||| |||||||||| || || |||||||||| |||||||||| ||| |
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| T |
30565659 |
gatcgaaggaa-tctcctccaaacgcgacatgaattaaaaatgtgaaaacacgaaga-ggggagaagagggcgcgcgatcgaagg-aatctcctccgaac |
30565755 |
T |
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| Q |
124 |
ttggcatgaattaaaaatg |
142 |
Q |
| |
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| T |
30565756 |
ccgacatgaattaaaaatg |
30565774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 30565511 - 30565669
Alignment:
| Q |
28 |
gaaggaaatctcctccgaacgcgacatgaattaaaaatgaaaatacgcgtag-aggggga-gaagaaggtgcacgatcgaaggaaatctcctccaaactt |
125 |
Q |
| |
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||||| ||||||||||||| || |||||||||||||| || ||||| || ||||||| ||||| || || |||||||||| |||||||||||||| | |
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| T |
30565511 |
gaagggaatctcctccgaatccggcatgaattaaaaatacgaaaacgcgaagaagggggatgaagagggcgctcgatcgaagg-aatctcctccaaacgt |
30565609 |
T |
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| Q |
126 |
ggcatgaattaaaaatgcgaacacgcgtagagggggagaagaaggctcgcgatcgaaggaa |
186 |
Q |
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||||||||||||||| || ||| | ||| |||||||||| ||| |||||||||||||| |
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| T |
30565610 |
tacatgaattaaaaatgaaaaaacgtgaaga-ggggagaagatggcgcgcgatcgaaggaa |
30565669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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