View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17345_high_5 (Length: 358)
Name: NF17345_high_5
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17345_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 3706373 - 3706062
Alignment:
| Q |
16 |
ccttctccaaccaaacgccacaacaagatctcagttatcggcgcaggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctagtcgacg |
115 |
Q |
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| T |
3706373 |
ccttctccaaccaaacgccacaacaagatctcagttatcggcgcaggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctagtcgacg |
3706274 |
T |
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| Q |
116 |
agcttgttcttgttgacaccattcctgacaaactacgaggtgagatgctagatctacaacatgctgcggccttcctcccccgtactaagatccaggcctc |
215 |
Q |
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| T |
3706273 |
agcttgttcttgttgacgccattcctgacaaactacgaggtgagatgctggatctacaacatgctgcggccttcctcccccgcactaagatccaggcctc |
3706174 |
T |
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| Q |
216 |
cactgactattcagtgacgatggggtctgacctctgcatcgtcactgctggggctcgccagattaatggcgagtccagattgaatttgctacaaaggaat |
315 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3706173 |
cactgactattcagtgacgatgggttccgacctctgcatcgtcactgctggggctcgtcagattaatggcgagtccagattgaatttgctacaaaggaat |
3706074 |
T |
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| Q |
316 |
gtagctttgttt |
327 |
Q |
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|||||||||||| |
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| T |
3706073 |
gtagctttgttt |
3706062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 41765147 - 41765310
Alignment:
| Q |
34 |
cacaacaagatctcagttatcggcgcaggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctagtcgacgagcttgttcttgttgaca |
133 |
Q |
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|||||||||||||| || |||||||| |||||||| || ||||| || ||||| ||||||||||| |||||||| |||||||| || | || |||| |
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| T |
41765147 |
cacaacaagatctccgtcatcggcgccggcaacgtcggcatggccattgctcagaccatcctaactcaagacctcacagacgagctcgtcatcgtcgaca |
41765246 |
T |
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| Q |
134 |
ccattcctgacaaactacgaggtgagatgctagatctacaacatgctgcggccttcctcccccg |
197 |
Q |
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|| || |||||||| || || || ||||| ||||| ||||| ||||| || ||||||||||| |
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| T |
41765247 |
acaaacccgacaaactccgcggcgaaatgcttgatcttcaacacgctgctgctttcctcccccg |
41765310 |
T |
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