View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17345_high_6 (Length: 338)
Name: NF17345_high_6
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17345_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 43114806 - 43114494
Alignment:
| Q |
9 |
gagatgaattatttatcaatcatggcctgcaaccacaaaatactagtaataactaacttctcaaatgtgtttatggacagcaacacaatgcatgtttggg |
108 |
Q |
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| T |
43114806 |
gagatgaattatttatcaatcatggcctgcaaccacaaaatactagtaataactaacttctcaaatgtgtttatggacagcaacacaatgcatatttggg |
43114707 |
T |
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| Q |
109 |
tttcagtttacaataatcaaaacacagtgtaattttaataaaatcaacattttgaagattgaataaaatcacactactacattctacaacaattttagat |
208 |
Q |
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| T |
43114706 |
ttacagtttacaataatcaaaacacagtgtaattttaataaaatcaacattttgaagattgaataaaatcacactactacattctacaacaattttagat |
43114607 |
T |
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| Q |
209 |
gtcaccaatcaccataatctctaacatatactaggttacaacactattatgttcaaatgtgaccgattagatccacgttcactataaatagataaaatat |
308 |
Q |
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| T |
43114606 |
gtcaccaatcaccataatctcaaacatatactaggttacaacactattatgttcaaatgtgaccgattaaatccacgttcactatgaatagataaaatat |
43114507 |
T |
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| Q |
309 |
tagatatactatg |
321 |
Q |
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| T |
43114506 |
tggatatactatg |
43114494 |
T |
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