View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17345_high_7 (Length: 301)

Name: NF17345_high_7
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17345_high_7
NF17345_high_7
[»] chr2 (2 HSPs)
chr2 (6-113)||(22018619-22018726)
chr2 (40-113)||(20714180-20714253)
[»] chr4 (2 HSPs)
chr4 (36-109)||(21261870-21261943)
chr4 (223-290)||(21261605-21261672)
[»] scaffold1789 (1 HSPs)
scaffold1789 (40-113)||(1090-1163)
[»] scaffold0097 (1 HSPs)
scaffold0097 (40-113)||(18019-18092)
[»] chr8 (2 HSPs)
chr8 (40-113)||(22527881-22527954)
chr8 (40-113)||(25990502-25990575)
[»] chr6 (1 HSPs)
chr6 (40-113)||(33094616-33094689)
[»] chr5 (1 HSPs)
chr5 (40-113)||(13173069-13173142)
[»] chr3 (1 HSPs)
chr3 (40-113)||(20986702-20986775)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 22018726 - 22018619
Alignment:
Q  6 taaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgccc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  22018726 taaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccacaaagaaatgttacatctcattgtgccc 22018627  T
Q  106 gactatcc 113  Q
    ||||||||    
T  22018626 gactatcc 22018619  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 20714253 - 20714180
Alignment:
Q  40 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 113  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  20714253 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 20714180  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 21261943 - 21261870
Alignment:
Q  36 tgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgact 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21261943 tgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgact 21261870  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 21261672 - 21261605
Alignment:
Q  223 atagtttgatgacaattgttttggtagttaattattattgtcattctggtgctataaagtggaagata 290  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  21261672 atagtttgatgacaattgttttggtaattaattattattgtcattctggtgctataaagtgaaagata 21261605  T

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Target: scaffold1789 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1789
Description:

Target: scaffold1789; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 1090 - 1163
Alignment:
Q  40 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 113  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  1090 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 1163  T

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Target: scaffold0097 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 18092 - 18019
Alignment:
Q  40 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 113  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  18092 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 18019  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 22527954 - 22527881
Alignment:
Q  40 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 113  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  22527954 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 22527881  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 25990575 - 25990502
Alignment:
Q  40 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 113  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  25990575 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 25990502  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 33094616 - 33094689
Alignment:
Q  40 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 113  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  33094616 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 33094689  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 13173142 - 13173069
Alignment:
Q  40 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 113  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  13173142 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 13173069  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 20986702 - 20986775
Alignment:
Q  40 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 113  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  20986702 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 20986775  T

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