View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17345_low_12 (Length: 221)
Name: NF17345_low_12
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17345_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 13879406 - 13879590
Alignment:
| Q |
37 |
cttgttcttgagcttaggtaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagc |
136 |
Q |
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| T |
13879406 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
13879505 |
T |
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| Q |
137 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcc |
221 |
Q |
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| T |
13879506 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcc |
13879590 |
T |
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Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 13875189 - 13875373
Alignment:
| Q |
37 |
cttgttcttgagcttaggtaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagc |
136 |
Q |
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|||||| |||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| || |
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| T |
13875189 |
cttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgcttccctttcaagtcgagt |
13875288 |
T |
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| Q |
137 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcc |
221 |
Q |
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| T |
13875289 |
gtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcc |
13875373 |
T |
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