View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17345_low_13 (Length: 220)
Name: NF17345_low_13
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17345_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 32876684 - 32876861
Alignment:
| Q |
1 |
ttagagtcggtcagactgagggtataagtggagaccgacatataactttgaagaacaatattagcatccatgttttaagtctgttagaatcggtttctga |
100 |
Q |
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| T |
32876684 |
ttagagtcggccagactgagggtataagtggagaccgacatataactttgaagaacaatattagcatccatgttttaagtctgttagaatcggtttctga |
32876783 |
T |
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| Q |
101 |
ctgacgccaaaatgcagttttcttgcagtgatttatattaataaattttggttaaatacctataaatcttccgatctt |
178 |
Q |
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| T |
32876784 |
ctgacgccgaaatgcagttttcttgcagtgatttatattaataaattttggttaaatacctataaatcttccgatctt |
32876861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 32887318 - 32887427
Alignment:
| Q |
67 |
tccatgttttaagtctgttagaatcggtttctgactgacgccaaaatgcagttttcttgcagtgatttatattaataaattttggttaaatacctataaa |
166 |
Q |
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| T |
32887318 |
tccatgtttcaagtttgttagagtaagtttttgaccgacgccaaaatgcagttttcttatagtgatttatatcaataaattttggttaaatatgtattaa |
32887417 |
T |
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| Q |
167 |
tcttccgatc |
176 |
Q |
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| T |
32887418 |
tcttctgatc |
32887427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32887139 - 32887220
Alignment:
| Q |
1 |
ttagagtcggtcagactgagggtataagtggaga--ccgacatataactttgaagaacaatattagcatccatgttttaagt |
80 |
Q |
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| T |
32887139 |
ttagagtcggccagacggagagtataagttgagagacccacatataacgttgaagaacaatgttaacgtccatgtttcaagt |
32887220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 558362 - 558318
Alignment:
| Q |
92 |
ggtttctgactgacgccaaaatgcagttttcttgcagtgatttat |
136 |
Q |
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| T |
558362 |
ggtttctgactgatgccaaaatgcaattttcttgtagtgagttat |
558318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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