View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17345_low_14 (Length: 219)

Name: NF17345_low_14
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17345_low_14
NF17345_low_14
[»] chr1 (12 HSPs)
chr1 (10-203)||(17653217-17653408)
chr1 (6-189)||(47050352-47050531)
chr1 (6-94)||(29288999-29289087)
chr1 (16-184)||(17478575-17478739)
chr1 (6-108)||(14650451-14650553)
chr1 (6-108)||(14660242-14660344)
chr1 (8-96)||(16100924-16101013)
chr1 (16-123)||(263007-263115)
chr1 (48-114)||(17981719-17981786)
chr1 (47-96)||(19657319-19657369)
chr1 (153-197)||(263141-263185)
chr1 (49-96)||(16104423-16104471)
[»] chr6 (16 HSPs)
chr6 (10-203)||(22014150-22014340)
chr6 (6-123)||(28040879-28040996)
chr6 (6-189)||(25478096-25478275)
chr6 (6-118)||(17357688-17357801)
chr6 (6-118)||(27684201-27684314)
chr6 (6-118)||(27691520-27691633)
chr6 (13-173)||(15970279-15970439)
chr6 (13-108)||(6952403-6952498)
chr6 (6-96)||(33055814-33055905)
chr6 (13-123)||(27651185-27651295)
chr6 (6-96)||(33063293-33063384)
chr6 (40-108)||(27527462-27527531)
chr6 (22-108)||(9815053-9815140)
chr6 (18-123)||(16694059-16694165)
chr6 (40-118)||(13141996-13142075)
chr6 (22-96)||(30130534-30130609)
[»] chr2 (9 HSPs)
chr2 (10-203)||(44324258-44324448)
chr2 (6-118)||(31714048-31714161)
chr2 (6-118)||(39154633-39154746)
chr2 (6-123)||(45332839-45332956)
chr2 (13-123)||(808579-808689)
chr2 (16-108)||(4406347-4406440)
chr2 (23-108)||(9311064-9311150)
chr2 (40-96)||(10416155-10416212)
chr2 (22-96)||(4698095-4698170)
[»] chr4 (8 HSPs)
chr4 (6-189)||(27560975-27561154)
chr4 (6-108)||(4763405-4763508)
chr4 (33-123)||(51533841-51533930)
chr4 (33-123)||(18694128-18694217)
chr4 (22-107)||(27733593-27733678)
chr4 (13-113)||(5358535-5358635)
chr4 (16-118)||(54351775-54351876)
chr4 (13-123)||(11512701-11512813)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-203)||(60733-60915)
[»] chr3 (9 HSPs)
chr3 (7-189)||(19435185-19435363)
chr3 (10-108)||(28058369-28058468)
chr3 (10-108)||(28068794-28068893)
chr3 (6-107)||(6911242-6911344)
chr3 (7-108)||(28103994-28104096)
chr3 (22-113)||(17954693-17954784)
chr3 (50-111)||(23397923-23397984)
chr3 (49-123)||(9436001-9436076)
chr3 (40-96)||(5705490-5705547)
[»] chr8 (6 HSPs)
chr8 (6-123)||(18982597-18982714)
chr8 (13-123)||(26917241-26917350)
chr8 (10-123)||(4706552-4706665)
chr8 (13-113)||(28603022-28603122)
chr8 (47-112)||(26340387-26340452)
chr8 (13-108)||(15925123-15925219)
[»] chr5 (4 HSPs)
chr5 (10-123)||(5519373-5519486)
chr5 (22-123)||(15599016-15599117)
chr5 (10-123)||(42785670-42785783)
chr5 (16-106)||(27198198-27198289)
[»] scaffold0406 (1 HSPs)
scaffold0406 (10-189)||(3832-4007)
[»] scaffold0713 (1 HSPs)
scaffold0713 (6-108)||(892-995)
[»] scaffold0002 (3 HSPs)
scaffold0002 (16-124)||(412872-412980)
scaffold0002 (49-124)||(406869-406944)
scaffold0002 (16-113)||(424255-424352)
[»] chr7 (4 HSPs)
chr7 (16-113)||(36264128-36264224)
chr7 (13-108)||(28803742-28803838)
chr7 (34-108)||(44060056-44060131)
chr7 (42-114)||(29466909-29466983)
[»] scaffold0438 (2 HSPs)
scaffold0438 (21-112)||(7563-7654)
scaffold0438 (47-112)||(10548-10613)
[»] scaffold0012 (2 HSPs)
scaffold0012 (134-203)||(233410-233479)
scaffold0012 (42-119)||(182811-182889)
[»] scaffold0036 (1 HSPs)
scaffold0036 (16-105)||(31705-31792)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 17653408 - 17653217
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttact 109  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||    
T  17653408 ttaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgcgacttact 17653309  T
Q  110 ctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggt 203  Q
    |||||| |||||||         |||||||||||||||| || |||||||||||||||||||||||||||||||| | || ||||||| |||||    
T  17653308 ctttctctttctat--tttttttccagattttcaagcagctgagtagaaagctgctagtagactcgaagctcagcggcgtcacattttgttggt 17653217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 47050531 - 47050352
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaact 105  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||    
T  47050531 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgact 47050432  T
Q  106 tactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 189  Q
    ||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  47050431 tactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 47050352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 29289087 - 29288999
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaag 94  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  29289087 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaag 29288999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 17478739 - 17478575
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 115  Q
    |||||||||||||||  |||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||     
T  17478739 attagatttgagaaag-taaataatcgtgcccttgtgcgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttactctctca 17478641  T
Q  116 ttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagc 184  Q
    ||||||||         |||||||||||||||| |  || || |||||||||||||||| ||| |||||    
T  17478640 ttttctat---ttttttccagattttcaagcagctaagtggagagctgctagtagactcaaagttcagc 17478575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 14650451 - 14650553
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 104  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||| ||    
T  14650451 taagttaaaaattagatttgaaaaaaa-aaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcactaagtctttgtgac 14650549  T
Q  105 ttac 108  Q
    ||||    
T  14650550 ttac 14650553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 14660242 - 14660344
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 104  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||| ||    
T  14660242 taagttaaaaattagatttgaaaaaaa-aaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcactaagtctttgtgac 14660340  T
Q  105 ttac 108  Q
    ||||    
T  14660341 ttac 14660344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 16100924 - 16101013
Alignment:
Q  8 agttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  16100924 agttaaaaattagatttgagaaaaataaataatcgtgaccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 16101013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 263007 - 263115
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 114  Q
    |||||||| ||||||  ||| || |||||||| | | |||||||||| |||| |||||| |||||||||| ||||||||||||||||  |||||||||||    
T  263007 attagattcgagaaacttaattactcgtgcccatatatgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggcttactctttc 263106  T
Q  115 tttttctat 123  Q
     ||||||||    
T  263107 gttttctat 263115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 17981786 - 17981719
Alignment:
Q  48 ttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 114  Q
    ||||||||||||||| |||||||||||  ||||||||| |||| |||||| |||| ||||||||||||    
T  17981786 ttgtgtgtttcccttctagttggtggtgattgttgtctcctcaataagtctttgtgacttactctttc 17981719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 19657369 - 19657319
Alignment:
Q  47 cttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    |||||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  19657369 cttgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 19657319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 263141 - 263185
Alignment:
Q  153 gtagaaagctgctagtagactcgaagctcagcagtgtgacatttt 197  Q
    |||||||||||||||||||||| | | |||||||||| |||||||    
T  263141 gtagaaagctgctagtagactcaaggttcagcagtgtcacatttt 263185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 16104423 - 16104471
Alignment:
Q  49 tgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  16104423 tgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 16104471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 22014150 - 22014340
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttact 109  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||    
T  22014150 ttaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgcgacttact 22014249  T
Q  110 ctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggt 203  Q
    |||||| |||||||         |||||||||||||||| || |||||||||||||||||||||||||||||| | | || ||||||| |||||    
T  22014250 ctttctctttctat---ttttttccagattttcaagcagctgagtagaaagctgctagtagactcgaagctcaacggcgtcacattttgttggt 22014340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 28040879 - 28040996
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaact 105  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||    
T  28040879 taagttaaaaattagatttgagaaaaataaataatcgtgtccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgact 28040978  T
Q  106 tactctttctttttctat 123  Q
    ||||||||  ||||||||    
T  28040979 tactcttttattttctat 28040996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 25478275 - 25478096
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaact 105  Q
    |||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||    
T  25478275 taagttaaaaattatatttgagaaaagtaaaaaatcgtgcccttgtgtgtttcccttctagttggtagtggttgttgtctctcactaagtccttgtgact 25478176  T
Q  106 tactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 189  Q
    ||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  25478175 tactcttttattttctat----ttttttcagattttcaagcagctacgtaggaagctgctagtagactcaaagttcagccgtgt 25478096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 17357688 - 17357801
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  17357688 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgttttccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 17357787  T
Q  105 ttactctttctttt 118  Q
    ||||||||||||||    
T  17357788 ttactctttctttt 17357801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 27684201 - 27684314
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 104  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  27684201 taagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 27684300  T
Q  105 ttactctttctttt 118  Q
    ||||||||||||||    
T  27684301 ttactctttctttt 27684314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 27691520 - 27691633
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 104  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  27691520 taagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 27691619  T
Q  105 ttactctttctttt 118  Q
    ||||||||||||||    
T  27691620 ttactctttctttt 27691633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 15970439 - 15970279
Alignment:
Q  13 aaaattagatttgagaaaaataaat-agtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactct 111  Q
    ||||||||||||||||||| ||| | | ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||    
T  15970439 aaaattagatttgagaaaagtaatttaatcgtgcccttgtgtgttgcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttattct 15970340  T
Q  112 ttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagact 173  Q
    ||  ||||||||          ||||||| |||||||||  |||||||||||||||||||||    
T  15970339 tttattttctat-tattttcttcagatttccaagcagttaagtagaaagctgctagtagact 15970279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 6952403 - 6952498
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttac 108  Q
    |||||| ||||||||||||  ||||| |||||||||||||||||| |||| || || ||||| |||||||||||||||||||||||||| ||||||    
T  6952403 aaaatttgatttgagaaaaggaaataatcgtgcccttgtgtgttttccttctacttagtggtggttgttgtctctcactaagtccttgtgacttac 6952498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 33055814 - 33055905
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| || ||||||||  ||||||||| |||||||||||    
T  33055814 taagttaaaaattagatttgagaaaaataaataatcgtgcccatatgtgtttcccttctatttggtggtgattgttgtctcctcactaagtc 33055905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 27651185 - 27651295
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 112  Q
    ||||| |||||||||||||  ||||| | |||| || |||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||| ||    
T  27651185 aaaatcagatttgagaaaataaaataattgtgctctcgtgtgtttcctttctagttggtggtggttgttgtctctcactaagtccttgtgacttactatt 27651284  T
Q  113 tctttttctat 123  Q
    |  ||||||||    
T  27651285 ttattttctat 27651295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 33063293 - 33063384
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    ||||||||||||||||||||||||||||||||| |||||||| || |||||||| || || ||||||||  ||||||||| |||||||||||    
T  33063293 taagttaaaaattagatttgagaaaaataaataatcgtgcccatgcgtgtttccattctatttggtggtgattgttgtctcctcactaagtc 33063384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 27527462 - 27527531
Alignment:
Q  40 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 108  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||| ||||||    
T  27527462 tcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcactaagtctttgtgacttac 27527531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 9815053 - 9815140
Alignment:
Q  22 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 108  Q
    ||||||||||  ||||| |||||| |||||||||||||||| |||||||| || |||||||||| ||||||||||| |||| ||||||    
T  9815053 tttgagaaaagaaaataatcgtgctcttgtgtgtttcccttctagttggtagtggttgttgtctgctcactaagtctttgtgacttac 9815140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 16694165 - 16694059
Alignment:
Q  18 tagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttctt 116  Q
    |||||||||||||  ||| || | |||||| ||||||||| |||| |||| |||||| |||||||||| ||||||||||||| ||  ||||||||||| |    
T  16694165 tagatttgagaaacttaattacttgtgcccatgtgtgttttccttctagtcggtggttgttgttgtctcctcactaagtcctcgtggcttactctttcat 16694066  T
Q  117 tttctat 123  Q
    |||||||    
T  16694065 tttctat 16694059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 13142075 - 13141996
Alignment:
Q  40 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctc-tcactaagtccttgtaacttactctttctttt 118  Q
    ||||||||  ||||||| ||||| | ||  ||||| ||||||||||| |||||||||||||||  |||||||||||||||    
T  13142075 tcgtgcccaagtgtgttacccttcttgtcagtggtggttgttgtctcctcactaagtccttgtggcttactctttctttt 13141996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 30130534 - 30130609
Alignment:
Q  22 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    |||||||||  ||| || |||||| | |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  30130534 tttgagaaacttaattactcgtgctcatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 30130609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 44324258 - 44324448
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttact 109  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||    
T  44324258 ttaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgcgacttact 44324357  T
Q  110 ctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggt 203  Q
    |||||| |||||||         |||||||||||||||| || |||||||||||||||||||||||||||||| | | || ||||||| |||||    
T  44324358 ctttctctttctat---ttttttccagattttcaagcagctgagtagaaagctgctagtagactcgaagctcaacggcgtcacattttgttggt 44324448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 31714048 - 31714161
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  31714048 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 31714147  T
Q  105 ttactctttctttt 118  Q
    ||||||||||||||    
T  31714148 ttactctttctttt 31714161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 39154746 - 39154633
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 104  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  39154746 taagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 39154647  T
Q  105 ttactctttctttt 118  Q
    ||||||||||||||    
T  39154646 ttactctttctttt 39154633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 45332839 - 45332956
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaact 105  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||| || |||    
T  45332839 taagttaaaaattagatttgagaaaagtaaataatcgttcccttgtgtgtttcccttctagttggtagtggttgttgtctctcactaagtcctcgtgact 45332938  T
Q  106 tactctttctttttctat 123  Q
    ||||||||  ||||||||    
T  45332939 tactcttttattttctat 45332956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 808689 - 808579
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 112  Q
    ||||||||||||||||||| ||| || |||||| |||||| ||||||| | |||||||||||  ||||||||||||||||||||| ||| ||||||||||    
T  808689 aaaattagatttgagaaaagtaactaatcgtgctcttgtgggtttcccctctagttggtggtgattgttgtctctcactaagtccctgtgacttactctt 808590  T
Q  113 tctttttctat 123  Q
    |  ||||||||    
T  808589 ttattttctat 808579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 4406347 - 4406440
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 108  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || ||||||||| |||||||||||| |||| ||||||    
T  4406347 attagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtctttgtgacttac 4406440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 9311150 - 9311064
Alignment:
Q  23 ttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 108  Q
    |||||||||  ||||| | ||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||| | ||||||    
T  9311150 ttgagaaaagaaaataattgtgcccttgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtccttatgacttac 9311064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 10416155 - 10416212
Alignment:
Q  40 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    |||||||| |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  10416155 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 10416212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 4698095 - 4698170
Alignment:
Q  22 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    |||||||||  ||| || ||||| || |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  4698095 tttgagaaacttaattactcgtgtccatgtgtgtttcccttatagttggtggtgattgttgtctcctcactaagtc 4698170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 27561154 - 27560975
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaact 105  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||    
T  27561154 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgact 27561055  T
Q  106 tactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 189  Q
    ||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  27561054 tactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 27560975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 4763508 - 4763405
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaac 104  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || ||||||||| |||||||||||| |||| ||    
T  4763508 taagttaaaaattagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtctttgtgac 4763409  T
Q  105 ttac 108  Q
    ||||    
T  4763408 ttac 4763405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 51533841 - 51533930
Alignment:
Q  33 taaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctat 123  Q
    |||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||| || |||||    
T  51533841 taaataatcgtgcccttgtgtgtttcccttctagt-ggtggtggttgttgtctctcactaagtccttgtgacttactctttcattgtctat 51533930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 18694217 - 18694128
Alignment:
Q  33 taaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctat 123  Q
    |||||| |||||||||||||||||||||||  ||| |||||| |||||||||||||||||||||||||| |||||||||||| || |||||    
T  18694217 taaataatcgtgcccttgtgtgtttcccttccagt-ggtggtggttgttgtctctcactaagtccttgtgacttactctttcattctctat 18694128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 27733678 - 27733593
Alignment:
Q  22 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaactta 107  Q
    ||||||||| ||| ||| ||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||    
T  27733678 tttgagaaatatacataatcgtgcccttgtgtgtttcccttctagtgggtagtggttgttgtctctcactaagtccttgtgactta 27733593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 5358635 - 5358535
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 112  Q
    |||||| |||||||||||| |||||| ||||| ||||||||||||| ||| |||| ||| || |||||||||| ||||||||||||| | ||||||||||    
T  5358635 aaaatttgatttgagaaaactaaataatcgtgtccttgtgtgtttctcttctagtgggtagtggttgttgtctttcactaagtccttatgacttactctt 5358536  T
Q  113 t 113  Q
    |    
T  5358535 t 5358535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 54351876 - 54351775
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 115  Q
    |||||||||||||||  ||||||  ||||| ||||| ||||||| || ||||||||||| ||||||||||||||||||||||| ||  ||||||||||||    
T  54351876 attagatttgagaaag-taaataaccgtgctcttgtatgtttcctttctagttggtggtggttgttgtctctcactaagtcctagtggcttactctttct 54351778  T
Q  116 ttt 118  Q
    |||    
T  54351777 ttt 54351775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 11512813 - 11512701
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgt-aacttactc 110  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||| | || | |||||||||| ||||  |||||||||| || ||||||    
T  11512813 aaaattagatttgagaaaagtaattaatcgcgcccttgtgtgtttcccttttagtcgatgatggttgttgtctcctcatcaagtccttgtgaaattactc 11512714  T
Q  111 tttctttttctat 123  Q
    |||  ||||||||    
T  11512713 ttttattttctat 11512701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 60733 - 60915
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 115  Q
    |||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  60733 attagatttgagaaaagtaattaatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgcgacttactctttct 60832  T
Q  116 ttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggt 203  Q
     |||||||          ||||||||||||||| || ||||||||| ||||| |||||||||||||||| | || ||||||| |||||    
T  60833 ctttctat-----tttttcagattttcaagcagctgagtagaaagcggctagcagactcgaagctcagcggcgtcacattttgttggt 60915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 19435185 - 19435363
Alignment:
Q  7 aagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaactt 106  Q
    |||||||||||||||||||||||||||||||| ||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  19435185 aagttaaaaattagatttgagaaaaataaataatcgtgtccttttgcgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtaactt 19435284  T
Q  107 actctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 189  Q
    |||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  19435285 actcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 19435363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 28058468 - 28058369
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 108  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||| ||||||    
T  28058468 ttaaaaattagatttgagaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcactaagtctttgtgacttac 28058369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 28068893 - 28068794
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 108  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||| ||||||    
T  28068893 ttaaaaattagatttgagaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcactaagtctttgtgacttac 28068794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 6911344 - 6911242
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaac 104  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || ||||||||| |||||||||||| |||| ||    
T  6911344 taagttaaaaattagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtctttgtgac 6911245  T
Q  105 tta 107  Q
    |||    
T  6911244 tta 6911242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 28103994 - 28104096
Alignment:
Q  7 aagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaact 105  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||| |||| |||    
T  28103994 aagtaaaaaattagatttgagataaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttttctcctcactaagtctttgtgact 28104093  T
Q  106 tac 108  Q
    |||    
T  28104094 tac 28104096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 17954784 - 17954693
Alignment:
Q  22 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 113  Q
    ||||||||| ||| ||| |||||| ||| |||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||||||||    
T  17954784 tttgagaaatatacataatcgtgctcttttgtgtttcccttctagtgggtagtggttgttgtctctcactaagtccttgtgacttactcttt 17954693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 23397984 - 23397923
Alignment:
Q  50 gtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactct 111  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||    
T  23397984 gtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccctgtgacttactct 23397923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 9436076 - 9436001
Alignment:
Q  49 tgtgtgtttcccttttagttggtggtagttgttgtctctc-actaagtccttgtaacttactctttctttttctat 123  Q
    ||||||||| |||| ||||||||||| ||||||||||| | ||||||||||||| |||||||||||| ||||||||    
T  9436076 tgtgtgttttccttatagttggtggtggttgttgtctccccactaagtccttgtgacttactctttcattttctat 9436001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 5705547 - 5705490
Alignment:
Q  40 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 96  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  5705547 tcgtgcccttgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 5705490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 18982597 - 18982714
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaact 105  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| || |||    
T  18982597 taagttaaaaattcgatttgagaaaaataaataatcgtgcccttgggtgtttcccttctagttggtagtggttgttgtctctcactaagtcctcgtgact 18982696  T
Q  106 tactctttctttttctat 123  Q
    ||||||||  ||||||||    
T  18982697 tactcttttattttctat 18982714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 26917350 - 26917241
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 112  Q
    |||||| |||||||||||| |||| | ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |    
T  26917350 aaaatttgatttgagaaaagtaaagaatcgtgcccttgtgtgtttcccttctagt-ggtggtggttgttgtctctcactaagtccttgtaacttactcct 26917252  T
Q  113 tctttttctat 123  Q
    || ||||||||    
T  26917251 tcattttctat 26917241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 4706665 - 4706552
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttact 109  Q
    |||||||||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||| ||| |||||||    
T  4706665 ttaaaaattagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgtctctcactaagtccctgtgacttact 4706566  T
Q  110 ctttctttttctat 123  Q
    ||||  ||||||||    
T  4706565 cttttattttctat 4706552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 28603122 - 28603022
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 112  Q
    ||||||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||| | | ||||||||||    
T  28603122 aaaattagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgtctctcactaagtccctctgacttactctt 28603023  T
Q  113 t 113  Q
    |    
T  28603022 t 28603022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 26340452 - 26340387
Alignment:
Q  47 cttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 112  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  26340452 cttgtgtgtttcccttctagttggtggtggttgttgtctctcactatgtccttgtgacttactctt 26340387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 15925123 - 15925219
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 108  Q
    |||||| |||||||||||| |||||| ||||||| ||||||| ||||||| |||||||||||  ||||||||| ||||||||||| |||| ||||||    
T  15925123 aaaatttgatttgagaaaagtaaataatcgtgccgttgtgtgcttcccttctagttggtggtgattgttgtctcctcactaagtctttgtgacttac 15925219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 5519486 - 5519373
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttact 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||  ||||||||||||||||||||| ||| |||||||    
T  5519486 ttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctatttggtggtgattgttgtctctcactaagtccctgtgacttact 5519387  T
Q  110 ctttctttttctat 123  Q
    ||||  ||||||||    
T  5519386 cttttattttctat 5519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 15599016 - 15599117
Alignment:
Q  22 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttct 121  Q
    |||||||||| |||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||||||    
T  15599016 tttgagaaaagtaaataatcgtgcccatgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttactctttaattttct 15599115  T
Q  122 at 123  Q
    ||    
T  15599116 at 15599117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 42785670 - 42785783
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttact 109  Q
    |||||||||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||| ||| |||||||    
T  42785670 ttaaaaattagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgtctctcactaagtccctgtgacttact 42785769  T
Q  110 ctttctttttctat 123  Q
    ||||  ||||||||    
T  42785770 cttttattttctat 42785783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 27198289 - 27198198
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaactt 106  Q
    |||||||||||||||  ||| || | |||| ||||||||||| | || ||||||||||| |||||||||| ||||||||||| |||| ||||    
T  27198289 attagatttgagaaagttaactatttgtgctcttgtgtgtttacgttctagttggtggtggttgttgtctcctcactaagtctttgtgactt 27198198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 3832 - 4007
Alignment:
Q  10 ttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttact 109  Q
    |||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||    
T  3832 ttaaaaattatatttgagaaaagtaaaaaatcgtgcccttgtgtgtttcccttctagttggtagtggttgttgtctctcactaagtccttgtgacttact 3931  T
Q  110 ctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 189  Q
    ||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  3932 cttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 4007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 892 - 995
Alignment:
Q  6 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||| |||| ||    
T  892 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgatgtctcctcactaagtctttgtgac 991  T
Q  105 ttac 108  Q
    ||||    
T  992 ttac 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 412980 - 412872
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 115  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||| |||||      
T  412980 attagatttgagaaaagtaattatccgtgcccttgtgtgtttcccttttagttagtggtagttgttgtctctcattaagaccttgtgacttaatctttta 412881  T
Q  116 ttttctata 124  Q
    |||||||||    
T  412880 ttttctata 412872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 406944 - 406869
Alignment:
Q  49 tgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctata 124  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||  |||||||||    
T  406944 tgtgtgtttcccttttagttggtggtggttgttgtctctcactaagtccttgtgacttaatcttttattttctata 406869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 424352 - 424255
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 113  Q
    |||||||||||||||| ||| ||   ||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||| ||||| |||||    
T  424352 attagatttgagaaaagtaattatcggtgcccttgtgcgtttcccttttagttgatggtggttgttgtctctcactatgtccttgtgacttaatcttt 424255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 36264224 - 36264128
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 113  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  36264224 attagatttgagaaaa-taaataatcgtgctcttgtgtgtttcccttcttgttggtggtggttgttgtctctcactaagtccctgtgacttactcttt 36264128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 28803742 - 28803838
Alignment:
Q  13 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 108  Q
    |||||| |||||||||||| |||||| |||||||||||||| |||||||| |||||||||||  ||||||||| ||||||||||| |||| ||||||    
T  28803742 aaaatttgatttgagaaaagtaaataatcgtgcccttgtgtatttcccttctagttggtggtgattgttgtctcctcactaagtctttgtgacttac 28803838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 44060131 - 44060056
Alignment:
Q  34 aaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 108  Q
    ||||| |||||||||||||||||||| || |||||||| || ||||||||| |||||||||||| |||| ||||||    
T  44060131 aaataatcgtgcccttgtgtgtttcctttctagttggtagtggttgttgtcttctcactaagtctttgtgacttac 44060056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 29466983 - 29466909
Alignment:
Q  42 gtgcccttgtgtgtttccctt-ttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 114  Q
    ||||||||||||||||||||| | |||||||||| |||||||||| ||| |||| || |||| |||||| |||||    
T  29466983 gtgcccttgtgtgtttcccttctaagttggtggtggttgttgtctcctcgctaaatcattgtgacttaccctttc 29466909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 7654 - 7563
Alignment:
Q  21 atttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 112  Q
    |||||||||||  ||||| |||| |||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||| ||||||||||    
T  7654 atttgagaaaagaaaataatcgtacccttgtgtgtttcccttctagttggtggtggttgttgtctctccctatgtccttgtgacttactctt 7563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 10613 - 10548
Alignment:
Q  47 cttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 112  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  10613 cttgtgtgtttcccttctagttggtggtggttgttgtctctcactatgtccttgtgacttactctt 10548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 233479 - 233410
Alignment:
Q  134 cagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggt 203  Q
    |||||||||||| || | ||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  233479 cagattttcaagaagctaggtagaaagttgctagtagactcgaagctcagcagtgtcacattttattggt 233410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 182889 - 182811
Alignment:
Q  42 gtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttcttttt 119  Q
    |||| ||||||||||| |||| |||||||||||  ||||||||| ||| |||||| ||||| ||||| |||||| ||||    
T  182889 gtgcacttgtgtgttttccttctagttggtggtgattgttgtctcctccctaagtacttgtgacttagtctttcatttt 182811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 31792 - 31705
Alignment:
Q  16 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctct-cactaagtccttgtaact 105  Q
    |||| |||||||||| |||| || | |||||||||| |||||||||| || ||||||||   |||||||||  ||||||||||||||||||    
T  31792 attatatttgagaaagataactatttgtgcccttgtatgtttcccttctatttggtggt---tgttgtctccgcactaagtccttgtaact 31705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University