View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17345_low_16 (Length: 204)

Name: NF17345_low_16
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17345_low_16
NF17345_low_16
[»] chr5 (3 HSPs)
chr5 (84-167)||(24653580-24653663)
chr5 (109-187)||(24651549-24651626)
chr5 (18-85)||(24654166-24654233)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 24653663 - 24653580
Alignment:
Q  84 atcttctcgtggacatcatacattgtgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttatt 167  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24653663 atcttctcgtggacatcatacattgtgaccattaacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttatt 24653580  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 24651626 - 24651549
Alignment:
Q  109 tgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaagagtttattcctat 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  24651626 tgaccattaacattaaattgtttaaatatacaaacaaatatgatatgttgtaatttattctaaaa-agtttattcctat 24651549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 24654233 - 24654166
Alignment:
Q  18 taaatttcttagtggttggattcgatagcataatatttcttttgaatgtacaaacaaaaatgatatat 85  Q
    ||||||||||||||||| ||||||||| |||||| ||  |||| ||||||||||||||||||||||||    
T  24654233 taaatttcttagtggtttgattcgataacataattttcttttttaatgtacaaacaaaaatgatatat 24654166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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