View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17345_low_3 (Length: 435)

Name: NF17345_low_3
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17345_low_3
NF17345_low_3
[»] chr3 (6 HSPs)
chr3 (1-220)||(19434968-19435179)
chr3 (1-228)||(28103769-28103988)
chr3 (1-228)||(28068902-28069116)
chr3 (1-220)||(6911349-6911564)
chr3 (1-228)||(28058477-28058691)
chr3 (38-181)||(11200699-11200834)
[»] chr1 (7 HSPs)
chr1 (1-220)||(47050536-47050747)
chr1 (1-220)||(16100706-16100917)
chr1 (1-220)||(14660026-14660237)
chr1 (1-220)||(29289101-29289312)
chr1 (1-228)||(17653417-17653634)
chr1 (1-220)||(14650235-14650446)
chr1 (26-220)||(19657461-19657649)
[»] chr6 (13 HSPs)
chr6 (1-220)||(25478280-25478491)
chr6 (1-220)||(27527203-27527414)
chr6 (13-220)||(33055601-33055797)
chr6 (2-228)||(22013924-22014140)
chr6 (15-218)||(28040664-28040859)
chr6 (114-220)||(33062984-33063090)
chr6 (14-220)||(27650961-27651160)
chr6 (1-87)||(33063205-33063288)
chr6 (6-103)||(6952290-6952387)
chr6 (3-219)||(15970450-15970657)
chr6 (44-217)||(17355375-17355540)
chr6 (1-109)||(27684088-27684196)
chr6 (1-109)||(27691407-27691515)
[»] chr5 (4 HSPs)
chr5 (1-228)||(5519495-5519712)
chr5 (1-218)||(42785455-42785661)
chr5 (41-220)||(15598659-15598829)
chr5 (46-103)||(27198374-27198431)
[»] chr4 (10 HSPs)
chr4 (1-220)||(4763513-4763727)
chr4 (1-167)||(27561159-27561317)
chr4 (12-102)||(11512835-11512925)
chr4 (163-228)||(27561332-27561397)
chr4 (6-77)||(8164473-8164542)
chr4 (45-101)||(5358666-5358722)
chr4 (128-220)||(11512948-11513039)
chr4 (128-218)||(5358734-5358824)
chr4 (273-319)||(40383358-40383404)
chr4 (51-167)||(54351969-54352078)
[»] chr2 (7 HSPs)
chr2 (2-228)||(44324032-44324248)
chr2 (1-167)||(45332676-45332834)
chr2 (138-219)||(2588117-2588198)
chr2 (129-228)||(808810-808909)
chr2 (163-220)||(45331962-45332019)
chr2 (1-217)||(31713836-31714043)
chr2 (1-109)||(39154751-39154860)
[»] chr8 (7 HSPs)
chr8 (1-220)||(18982382-18982592)
chr8 (1-218)||(4706674-4706877)
chr8 (15-103)||(26340512-26340602)
chr8 (12-102)||(28603144-28603234)
chr8 (114-216)||(26917464-26917567)
chr8 (138-228)||(15924891-15924982)
chr8 (6-80)||(15925033-15925107)
[»] scaffold0406 (1 HSPs)
scaffold0406 (1-220)||(3615-3823)
[»] scaffold0438 (2 HSPs)
scaffold0438 (14-218)||(7687-7884)
scaffold0438 (15-103)||(10673-10763)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-220)||(60505-60719)
[»] chr7 (4 HSPs)
chr7 (26-102)||(36264288-36264365)
chr7 (129-228)||(28803513-28803613)
chr7 (8-88)||(29467028-29467106)
chr7 (12-80)||(28803653-28803721)
[»] scaffold0713 (1 HSPs)
scaffold0713 (1-109)||(780-887)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19435179 - 19434968
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||    
T  19435179 gctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaa 19435080  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||    
T  19435079 atttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaat 19434988  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||||||||    
T  19434987 ccaaatagaatataaaaatc 19434968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 28103988 - 28103769
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||    
T  28103988 gctagtaactgtataaaaatataataaattcaccatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaa 28103889  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    || |||||| |        ||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| || ||||    
T  28103888 atctcaatgtc--------gtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaattgattataatgaaaaggaatcgagataatcaaat 28103797  T
Q  201 tcaaattgaatataaaaatcagacttaa 228  Q
     ||||| ||||||||||||||| |||||    
T  28103796 ccaaatagaatataaaaatcaggcttaa 28103769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28068902 - 28069116
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||| ||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||| ||||||||||||||| | |||  ||||    
T  28068902 gctagtaaccgtataaaaatataataaactcacaatcag---taccatgaaaattcataaaactttgtaaatctatcaaaccaaataagactat--caaa 28068996  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    ||||||||| |        ||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||    
T  28068997 atttcaatgtc--------gtcaagaagtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaaggaatcgagataatcaaat 28069088  T
Q  201 tcaaattgaatataaaaatcagacttaa 228  Q
     ||||| ||||||||||||| |||||||    
T  28069089 ccaaatagaatataaaaatcggacttaa 28069116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 6911349 - 6911564
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||   ||||||| |    
T  6911349 gctagtaactgtataaaaatataataaattcgcaatcaagtgtaccatgaaaattcataaaacttggtaattttatcaaaccaaataaggctatatcaga 6911448  T
Q  101 atttcaatgacaaaatgttgtcaagaggtg-aaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaa 199  Q
    ||||||||| |     || ||||||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| || ||     
T  6911449 atttcaatgtc-----gtcgtcaagaggtgaaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaagaatcgagataatcaag 6911543  T
Q  200 ttcaaattgaatataaaaatc 220  Q
    | ||||| |||||||||||||    
T  6911544 tccaaatagaatataaaaatc 6911564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28058477 - 28058691
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||| ||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||| ||||||||||||||| | |||  || |    
T  28058477 gctagtaaccgtataaaaatataataaactcacaatcag---taccatgaaaattcataaaactttgtaaatctatcaaaccaaataagactat--caga 28058571  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    ||||||||| |        ||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||    
T  28058572 atttcaatgtc--------gtcaagaagtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaaggaatcgagataatcaaat 28058663  T
Q  201 tcaaattgaatataaaaatcagacttaa 228  Q
     ||||| ||||||||||||| |||||||    
T  28058664 ccaaatagaatataaaaatcggacttaa 28058691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 11200834 - 11200699
Alignment:
Q  38 aagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccag 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |        ||||| || ||||||||||||||     
T  11200834 aagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataaaactatatcaaaattcc--------aatgtcgtaaagaggtgaaaccaa 11200743  T
Q  138 atccacaactttaaagataatatagaaatcgattataatgaaaa 181  Q
    ||| | |||| |||||  |||||| ||||||| |||||||||||    
T  11200742 atcaataactataaaggaaatatataaatcgagtataatgaaaa 11200699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47050536 - 47050747
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||    
T  47050536 gctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaa 47050635  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||    
T  47050636 atttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaat 47050727  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||||||||    
T  47050728 ccaaatagaatataaaaatc 47050747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 16100917 - 16100706
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||    
T  16100917 gctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgagaattcataaaactttgtaattttatcaaaccaaataagactatatcaaa 16100818  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||    
T  16100817 atttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaat 16100726  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||||||||    
T  16100725 ccaaatagaatataaaaatc 16100706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 14660237 - 14660026
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||    
T  14660237 gctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttctaattttatcaaaccaaataagactatatcaaa 14660138  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||    
T  14660137 atttc--------aatgtcgtcaagaagtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaat 14660046  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||||||||    
T  14660045 ccaaatagaatataaaaatc 14660026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 29289101 - 29289312
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||    
T  29289101 gctagtaaccgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactataacaaa 29289200  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| || ||||    
T  29289201 atttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaattgattataatgaaaaggaatcgagataatcaaat 29289292  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||| ||||    
T  29289293 ccaaatagaatataacaatc 29289312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 17653417 - 17653634
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||| ||||||||||||||||  ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||  || |    
T  17653417 gctagtaaccgtataaaaatataataacctcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatcaaaccaaataagactat--caga 17653514  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    ||||||||| |        |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||    
T  17653515 atttcaatgtc--------gtcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaaggaatcgagataatcaaat 17653606  T
Q  201 tcaaattgaatataaaaatcagacttaa 228  Q
     ||||| |||||||||| || |||||||    
T  17653607 ccaaatagaatataaaagtcggacttaa 17653634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 14650446 - 14650235
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||| | |||||||||    
T  14650446 gctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgataattcataaaactttttaattttatcaaaccaaataagactatatcaaa 14650347  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  | ||||    
T  14650346 atttc--------aatgtcgtcaagaagtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagatagtcaaat 14650255  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||||||||    
T  14650254 ccaaatagaatataaaaatc 14650235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 19657461 - 19657649
Alignment:
Q  26 aaattcataatcaagtatac-catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaa 124  Q
    ||||||| |||||||| ||  |||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||        |  |||||||| ||    
T  19657461 aaattcacaatcaagtgtatacatgaaaattcaaaaaactttgtaaatttatcaaaccaaataagattatatcgaaat--------cccaatgttgtaaa 19657552  T
Q  125 gaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgat-taaattcaaattgaatataaaaatc 220  Q
    ||||| || ||| |||| |||| ||||||| ||||||||||||    ||||||||||||||| || || ||  |||| ||||| |||||||||||||    
T  19657553 gaggtcaacccaaatccgcaaccttaaagaaaatatagaaatcacacataatgaaaaggaattgaaataatagaaatccaaatagaatataaaaatc 19657649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 25478280 - 25478491
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||    
T  25478280 gctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaacttcgtaattttatcaaaccaaataagactatatcaaa 25478379  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||    
T  25478380 atttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaat 25478471  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||||||||    
T  25478472 ccaaatagaatataaaaatc 25478491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27527414 - 27527203
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||    
T  27527414 gctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttctaattttatcaaaccaaataagactatatcaaa 27527315  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||    
T  27527314 atttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaat 27527223  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||||||||    
T  27527222 ccaaatagaatataaaaatc 27527203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 33055797 - 33055601
Alignment:
Q  13 ataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgaca 112  Q
    |||||||||||||||||||| ||   ||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||       
T  33055797 ataaaaatataataaattcacaa---agtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaaatttcaatg--- 33055704  T
Q  113 aaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaata 212  Q
         ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| ||||| |||||    
T  33055703 -----ttgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaata 33055609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 22014140 - 22013924
Alignment:
Q  2 ctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaa 101  Q
    ||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||  || ||    
T  22014140 ctagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatcaaaccaaataagactat--cagaa 22014043  T
Q  102 tttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaatt 201  Q
    |||||||| |        |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || ||||     
T  22014042 tttcaatgtc--------gtcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaagaaatcgagataatcaaatc 22013951  T
Q  202 caaattgaatataaaaatcagacttaa 228  Q
    ||||| |||||||||| || |||||||    
T  22013950 caaatagaatataaaagtcggacttaa 22013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 28040859 - 28040664
Alignment:
Q  15 aaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaa 114  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||        |    
T  28040859 aaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaactaaataagactatatcaaaatttc--------a 28040768  T
Q  115 atgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatata 214  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| |||||  ||||||    
T  28040767 atgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatataatata 28040668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 33063090 - 33062984
Alignment:
Q  114 aatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatat 213  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| ||||| ||||||    
T  33063090 aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatat 33062991  T
Q  214 aaaaatc 220  Q
    |||||||    
T  33062990 aaaaatc 33062984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 27651160 - 27650961
Alignment:
Q  14 taaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgac 111  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||| |||||       
T  27651160 taaaaatataataaattcacaatcaagagtataccatgaaaattcagaaaattttgtaaatttatcaaatcaaataatactatatcaaaatatcaat--- 27651064  T
Q  112 aaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaat 211  Q
          ||   |||||||||| ||| ||| ||||||||||||  ||||||||||||   ||||||||||||||||| | || || |||| ||||| || |    
T  27651063 ------ttcgtaagaggtgaatccaaatcaacaactttaaaggaaatatagaaatcatgtataatgaaaaggaatccaaataatcaaatccaaatagact 27650970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33063288 - 33063205
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaata 87  Q
    |||||||||  ||||||||||||||||||||| ||   ||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  33063288 gctagtaactgtataaaaatataataaattcacaa---agtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaata 33063205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 6952387 - 6952290
Alignment:
Q  6 taaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 103  Q
    ||||| ||||||||| ||||||| ||| ||| |||| ||||||||||||||  ||| |||||| ||||||||||||||||||| | ||||||||||||    
T  6952387 taaccgtataaaaatgtaataaactcacaataaagtgtaccatgaaaattcgaaaatctttgtgaatttatcaaaccaaataagactatatcaaaatt 6952290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 15970450 - 15970657
Alignment:
Q  3 tagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaat 102  Q
    ||||| || |||||||||||||| || |||||||| ||| |||| |||||||||  |||||||||||| ||||||||||||||||| | || ||||||||    
T  15970450 tagtacccgtataaaaatataatcaactcataatctagtgtaccttgaaaattcggaaaactttgtaactttatcaaaccaaataagactacatcaaaat 15970549  T
Q  103 ttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattc 202  Q
      ||||| |        ||  | ||||||| ||| ||||||||||||||  | ||||||||||||    |||||||||||| ||||| || || |||| |    
T  15970550 cgcaatgtc--------gtacaaaggtgaacccaaatccacaactttaattagaatatagaaatcatccataatgaaaagg-atcgaaataatcaaatcc 15970640  T
Q  203 aaattgaatataaaaat 219  Q
    |||| ||||||||||||    
T  15970641 aaatcgaatataaaaat 15970657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 217
Target Start/End: Complemental strand, 17355540 - 17355375
Alignment:
Q  44 accatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccac 143  Q
    |||||||||||||  ||||| | |||| ||||||||||||||||| | ||||| |||||| ||||| |        || | || ||||| ||| ||||||    
T  17355540 accatgaaaattcggaaaacatcgtaactttatcaaaccaaataaaagtatattaaaattccaatgtc--------gtaaggaagtgaacccaaatccac 17355449  T
Q  144 aactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaa 217  Q
    ||||||||||| ||||||| |||||  ||||||| |||||||||||| || || |||| ||||| ||||||||||    
T  17355448 aactttaaagaaaatatag-aatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaatataaaa 17355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 27684196 - 27684088
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||  ||||| | |||| || |||||||||||||| | ||||| |||    
T  27684196 gctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattcggaaaacatcgtaacttaatcaaaccaaataaaagtatattaaa 27684097  T
Q  101 atttcaatg 109  Q
    ||| |||||    
T  27684096 attccaatg 27684088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 27691515 - 27691407
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||  ||||| |  ||| || |||||||||||||| | ||||| |||    
T  27691515 gctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattcggaaaacatcttaacttaatcaaaccaaataaaagtatattaaa 27691416  T
Q  101 atttcaatg 109  Q
    ||| |||||    
T  27691415 attccaatg 27691407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5519495 - 5519712
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||  || |    
T  5519495 gctagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatcaaaccaaataagactat--caga 5519592  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    ||||||||| |         ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||    
T  5519593 atttcaatgtct--------tcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaaggaatcgagataatcaaat 5519684  T
Q  201 tcaaattgaatataaaaatcagacttaa 228  Q
     ||||| ||||||||||||| |||||||    
T  5519685 ccaaatagaatataaaaatcggacttaa 5519712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 42785661 - 42785455
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||| ||||||||||||| || | || |||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||  |  |    
T  42785661 gctagtaaccgtataaaaatataacaact-cacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatcaaaccaaacaagactat--cgga 42785565  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    ||||||||| |        |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||    
T  42785564 atttcaatgtc--------gtcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaatgaatcgagataatcaaat 42785473  T
Q  201 tcaaattgaatataaaaa 218  Q
     |||||  ||||||||||    
T  42785472 ccaaataaaatataaaaa 42785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 15598829 - 15598659
Alignment:
Q  41 tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatc 140  Q
    |||| |||||||||||||||||| || |||||||||||||| |||||| | ||||||||||| |||||| |        || |||||||||| ||| |||    
T  15598829 tataacatgaaaattcataaaaccttttaaatttatcaaacgaaataagactatatcaaaatctcaatgtc--------gtaaagaggtgaatccaaatc 15598738  T
Q  141 cacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 220  Q
    |||||||||||||| |||||||||||||  ||||||| ||||||||||| || || |||| ||||| |||||||||||||    
T  15598737 cacaactttaaagaaaatatagaaatcgcgtataatg-aaaggaatcgaaataatcaaatccaaatagaatataaaaatc 15598659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 27198374 - 27198431
Alignment:
Q  46 catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 103  Q
    |||||||||||| |||||||||||||||||| ||||||||||  | ||||||||||||    
T  27198374 catgaaaattcagaaaactttgtaaatttattaaaccaaatatgactatatcaaaatt 27198431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4763513 - 4763727
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||   ||||||| |    
T  4763513 gctagtaactgtataaaaatataataaattcgcaatcaagtgtaccatgaaaattcataaaacttggtaattttatcaaaccaaataaggctatatcaga 4763612  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    ||||||||| |     || ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||    
T  4763613 atttcaatgtc-----gtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaat 4763707  T
Q  201 tcaaattgaatataaaaatc 220  Q
     ||||| |||||||||||||    
T  4763708 ccaaatagaatataaaaatc 4763727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 27561159 - 27561317
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||    
T  27561159 gctagtaacggtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaa 27561258  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatc 167  Q
    |||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||    
T  27561259 atttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatc 27561317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 11512835 - 11512925
Alignment:
Q  12 tataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaat 102  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| | ||| |||||||    
T  11512835 tataaaaatataataaactcacaatcaagtataccatgaaaattcggaaaactttgtaactttatcaaaccaaataagactatgtcaaaat 11512925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 27561332 - 27561397
Alignment:
Q  163 aaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 228  Q
    |||||||||||||||||||||||||||||| || |||| ||||| |||||||||| || |||||||    
T  27561332 aaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 27561397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 8164473 - 8164542
Alignment:
Q  6 taaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatc 77  Q
    ||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |||  ||||||| ||||||    
T  8164473 taaccgtataaaaatataataaatttacaatcaagtgtaccatgaaaattcacaaa--tttgtaattttatc 8164542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 5358666 - 5358722
Alignment:
Q  45 ccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaa 101  Q
    ||||||||| |||||||||||| ||||||||| |||||||| || | ||||||||||    
T  5358666 ccatgaaaactcataaaactttataaatttattaaaccaaacaagactatatcaaaa 5358722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 11512948 - 11513039
Alignment:
Q  128 gtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 220  Q
    ||||| ||| ||||||||||||||||| |||| | |||||    |||||||||||||||||| || || |||| ||||| |||||||||||||    
T  11512948 gtgaacccaaatccacaactttaaagaaaataaa-aaatcatgcataatgaaaaggaatcgaaataatcaaatccaaatagaatataaaaatc 11513039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 5358734 - 5358824
Alignment:
Q  128 gtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaa 218  Q
    ||||||||| ||| || |||||||||  ||||||||||| || |||||||| |||||||  | || || |||| ||||| |||||||||||    
T  5358734 gtgaaaccaaatctaccactttaaagcaaatatagaaatagagtataatgagaaggaatgaaaataatcaaatccaaatagaatataaaaa 5358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 40383404 - 40383358
Alignment:
Q  273 ttgaaagccaaatttaatatctcatgttgcaaaatatctgtcatgtt 319  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||||||    
T  40383404 ttgaaagccaaattaaatatctcatattgaaaaatatctctcatgtt 40383358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 54351969 - 54352078
Alignment:
Q  51 aaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaacttta 150  Q
    ||||||| |||||| ||||||||||| ||||||||||| |  ||||||||||| ||||  |  ||       || ||||||||||| |||||||| ||||    
T  54351969 aaattcagaaaactgtgtaaatttattaaaccaaataagaccatatcaaaattccaatatcgtaa-------aaaaggtgaaaccaaatccacaatttta 54352061  T
Q  151 aagataatatagaaatc 167  Q
    |||||| ||||||||||    
T  54352062 aagatagtatagaaatc 54352078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 44324248 - 44324032
Alignment:
Q  2 ctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaa 101  Q
    ||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||  || ||    
T  44324248 ctagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatcaaaccaaataagactat--cagaa 44324151  T
Q  102 tttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaatt 201  Q
    |||||||| |        |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || ||||     
T  44324150 tttcaatgtc--------gtcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaagaaatcgagataatcaaatc 44324059  T
Q  202 caaattgaatataaaaatcagacttaa 228  Q
    ||||| |||||||||| || |||||||    
T  44324058 caaatagaatataaaagtcggacttaa 44324032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 45332834 - 45332676
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||    
T  45332834 gctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaa 45332735  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatc 167  Q
    |||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||    
T  45332734 atttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatc 45332676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 2588198 - 2588117
Alignment:
Q  138 atccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaat 219  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| || |||| ||||| ||||||||||||    
T  2588198 atccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcaagataatcaaatccaaatagaatataaaaat 2588117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 808810 - 808909
Alignment:
Q  129 tgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 228  Q
    |||| ||| |||||||| |||||||| |||||||||| ||  ||||||||||| |||||||||| || |||| ||||| |||||||||| || |||||||    
T  808810 tgaacccaaatccacaattttaaagaaaatatagaaaccgcgtataatgaaaaagaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 808909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 45332019 - 45331962
Alignment:
Q  163 aaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 220  Q
    |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  45332019 aaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 45331962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 31714043 - 31713836
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||  ||||| | |||| || |||||||||||||| | ||||| |||    
T  31714043 gctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattcggaaaacatcgtaacttaatcaaaccaaataaaagtatattaaa 31713944  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaa 199  Q
    ||| |        |||||||| | || ||||| ||| ||||||||| ||||||| ||||||| |||||  ||||||| |||||||||||| || || |||    
T  31713943 attcc--------aatgttgtaaggaagtgaacccaaatccacaac-ttaaagaaaatatag-aatcgcgtataatgaaaaaggaatcgaaataatcaaa 31713854  T
Q  200 ttcaaattgaatataaaa 217  Q
    | ||||| ||||||||||    
T  31713853 tccaaatagaatataaaa 31713836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 39154751 - 39154860
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc-ataaaactttgtaaatttatcaaaccaaataatattatatcaa 99  Q
    ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||   ||||| | |||| || |||||||||||||| | ||||| ||    
T  39154751 gctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattcggaaaaacatcgtaacttaatcaaaccaaataaaagtatattaa 39154850  T
Q  100 aatttcaatg 109  Q
    |||| |||||    
T  39154851 aattccaatg 39154860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18982592 - 18982382
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    ||||||||| ||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| | ||| |||||    
T  18982592 gctagtaactatataaaaatataataagttcacaatcaagtgtaccatggaaattcataaaactttgtaattttatcaaaccaaataagactatgtcaaa 18982493  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||        ||||| ||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||     
T  18982492 atttc--------aatgtcgtcaagaggtgaaacccaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaa- 18982402  T
Q  201 tcaaattgaatataaaaatc 220  Q
    || ||| |||||||||||||    
T  18982401 tccaatagaatataaaaatc 18982382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4706674 - 4706877
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||| ||||||||||||| || | || |||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||         
T  4706674 gctagtaaccgtataaaaatataacaact-cacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatcaaaccaaacaagactata----- 4706767  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    |||||||||        |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||    
T  4706768 atttcaatg--------ttgtcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaaggaatcgagataatcaaat 4706859  T
Q  201 tcaaattgaatataaaaa 218  Q
     |||||  ||||||||||    
T  4706860 ccaaataaaatataaaaa 4706877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 26340512 - 26340602
Alignment:
Q  15 aaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 103  Q
    |||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||    
T  26340512 aaaaatataataaactcacaatcaagagtataccatgaaaattcagaaaactttgtaaatttatcaaatcaaataagaatatatcaaaatt 26340602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 28603144 - 28603234
Alignment:
Q  12 tataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaat 102  Q
    ||||||||||| ||||| |||  ||||| | ||||||||||||||| |||||||||||| ||||||||||||||||| | |||||||||||    
T  28603144 tataaaaatatgataaactcacgatcaaatgtaccatgaaaattcagaaaactttgtaactttatcaaaccaaataaaagtatatcaaaat 28603234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 26917464 - 26917567
Alignment:
Q  114 aatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaata 212  Q
    ||||| || |||| ||||| ||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||||| || || |||| ||||| |||||    
T  26917464 aatgtcgtaaagaagtgaacccaaatccacaactttaaagaaaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaata 26917563  T
Q  213 taaa 216  Q
    ||||    
T  26917564 taaa 26917567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 15924982 - 15924891
Alignment:
Q  138 atccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 228  Q
    |||||||| |||||||| |||||||||||||  |||| || |||||||||||| || || |||| ||||| |||| |||||||| |||||||    
T  15924982 atccacaattttaaagaaaatatagaaatcgcatatagtgaaaaaggaatcgaaataatcaaatccaaatagaatgtaaaaatcggacttaa 15924891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 15925107 - 15925033
Alignment:
Q  6 taaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaa 80  Q
    ||||| ||||||||||||||||| ||  || ||||| |||  |||||||||| ||| |||| |||||||||||||    
T  15925107 taaccgtataaaaatataataaactctcaaacaagtgtactgtgaaaattcagaaatctttataaatttatcaaa 15925033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3823 - 3615
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    |||||||||  ||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||| ||||||||||||||||| | |||    ||    
T  3823 gctagtaactgtataaaaatataataaattcacaatcaaatgtaccatgaaaattcataaaacttcgtaattttatcaaaccaaataagactatc---aa 3727  T
Q  101 atttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaat 200  Q
    ||||||||| |        ||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||    
T  3726 atttcaatgtc--------gtcaagaggtgaaactaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaat 3635  T
Q  201 tcaaattgaatataaaaatc 220  Q
    ||| || |||||||||||||    
T  3634 tcacatagaatataaaaatc 3615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 7687 - 7884
Alignment:
Q  14 taaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgac 111  Q
    ||||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||| |||||      
T  7687 taaaaatataataaactcacaatcaagaatataccatgaaaattcagaaaactttgtaaatttatcaaatcaaataagaatatatcaaaattccaatg-- 7784  T
Q  112 aaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaat 211  Q
           ||  |||||||||| ||| ||| ||||||||||||| ||||||||||  |  ||| ||||||| ||||||| || || |||| ||||| ||||    
T  7785 -------tggtaagaggtgaatccaaatcaacaactttaaagaaaatatagaaactgggtatgatgaaaatgaatcgaaataatcaaatccaaatagaat 7877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 10673 - 10763
Alignment:
Q  15 aaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 103  Q
    |||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||    
T  10673 aaaaatataataaactcacaatcaagagtataccatgaaaattcagaaaactttgtaaatttatcaaatcaaataagaatatatcaaaatt 10763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 60719 - 60505
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaa--ctttgtaaatttatcaaaccaaataatattatatca 98  Q
    ||||||| || ||||||||||| ||||| |||  ||||||| |  ||||||||||| |||||  ||| |||  ||||||||||||||||| | |||||||    
T  60719 gctagtacccgtataaaaatattataaactcacgatcaagtgtctcatgaaaattcgtaaaaaacttggtagttttatcaaaccaaataagactatatca 60620  T
Q  99 aaatttcaatgacaaaatgttgtcaaga-ggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgatta 197  Q
    ||||       ||||| ||| || || | |||||| ||| |||| |||||||||||| ||||| |||||| |  |||||||||||||||||| || || |    
T  60619 aaat-------acaaa-tgtcgtaaaaaaggtgaatccaaatccgcaactttaaagaaaatatcgaaatcaagcataatgaaaaggaatcgaaataatca 60528  T
Q  198 aattcaaattgaatataaaaatc 220  Q
    ||| ||||| |||||||| ||||    
T  60527 aatccaaatagaatataacaatc 60505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 36264288 - 36264365
Alignment:
Q  26 aaattcataatcaagtatac-catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaat 102  Q
    ||||||| |||||||| ||  |||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||    
T  36264288 aaattcacaatcaagtgtatacatgaaaattcagaaaactttataaatttatcaaaccaaataagattatatcgaaat 36264365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 28803613 - 28803513
Alignment:
Q  129 tgaaaccagatccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaaatcagactta 227  Q
    |||| ||| |||||||| |||||||| |||||||||||||  ||||||| |||||||||||| || || |||| ||||| || |||||||||  ||||||    
T  28803613 tgaacccaaatccacaattttaaagagaatatagaaatcgcatataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaattggactta 28803514  T
Q  228 a 228  Q
    |    
T  28803513 a 28803513  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 29467028 - 29467106
Alignment:
Q  8 accatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataa 88  Q
    ||||| ||||||| ||||||||  | |||||||| ||||||| |||||||||||  ||| |||||||||| || |||||||    
T  29467028 accatgtaaaaatttaataaatcaacaatcaagtgtaccatggaaattcataaa--tttataaatttatccaatcaaataa 29467106  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 28803721 - 28803653
Alignment:
Q  12 tataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaa 80  Q
    ||||||||||||||||| ||  || |||||  ||| |||||||||| ||| |||| |||||||||||||    
T  28803721 tataaaaatataataaactcccaaacaagtgcaccgtgaaaattcagaaatctttataaatttatcaaa 28803653  T

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Target: scaffold0713 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 887 - 780
Alignment:
Q  1 gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaa 100  Q
    ||||||| || ||||||||||| |||| | || |||| ||| | |||||||||||   ||||| | |||| ||||||||||||||||| | ||||| |||    
T  887 gctagtacccgtataaaaatatgataact-cacaatcgagtgtgccatgaaaattaggaaaacatcgtaactttatcaaaccaaataaaagtatattaaa 789  T
Q  101 atttcaatg 109  Q
    ||| |||||    
T  788 attccaatg 780  T

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